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A 3D Fully Convolutional Network with various input dimension for brain extraction in MRI

Author:Xibo Zhang  Zhe Liu  Pascal Spincemaille  Yi Wang  

Institution:Cornell University  Tsinghua University  Tsinghua University  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2464  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 166  

A brain extraction algorithm for infant T2-weighted images based on the fuzzy c-means thresholding

Author:Inyoung Bae  Dongchan Kim  Jun-Young Chung  Yeji Han  

Institution:Gachon University  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2463  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 165  

A Cascaded Residual UNET for Fully Automated Segmentation of prostate and peripheral zone in T2-weighted 3D Fast Spin Echo Images

Author:Lavanya Umapathy  Wyatt Unger  Faryal Shareef  Hina Arif  Diego Martin  Maria Altbach  Ali Bilgin  

Institution:university of arizona  

Session Type:Oral  

Session Date:Wednesday, 15 May 2019  

Session Time:13:30  

Session Name:Image Processing & Analysis  

Program Number:0833  

Presentation Time:13:54   

Room Number:Room 510A-D  

Computer Number:

A Deep Learning Approach for Image Quality Assessment of Fetal Brain MRI

A Simple Fully Automated Method for Skull-Stripping Quality Control in Brain MR Image Processing Pipelines Evaluated Using Multicenter Data

Accurate Prenatal Diagnosis of Cleft Palate Using Magnetic Resonance Imaging with 3D Super-resolution Reconstruction

Analysis of Coil Combination for bSSFP Elliptical Signal Model

Author:Nicholas McKibben  Grayson Tarbox  Michael Mendoza  Neal Bangerter  

Institution:Brigham Young University  Imperial College London  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2472  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 174  

Are Root Mean Squared Error (RMSE) and Structural Similarity Index (SSIM) the Most Appropriate Metrics for Assessment of MR Image Quality?

Author:Allister Mason  James Rioux  Sharon Clarke  Andreu Costa  Matthias Schmidt  Valerie Keough  Thien Huynh  Steven Beyea  

Institution:Dalhousie University  Nova Scotia Health Authority  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2465  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 167  

Association of geometric features with genetic markers in glioblastoma multiforme

Author:Adam Hasse  Mark Dapash  Yong Jeong  Star Su  Abrianna Cummings  Sameer Ansari  Daniel Ginat  Timothy Carroll  

Institution:Depaul University  Northwestern University  University of Chicago  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2460  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 162  

Automated Analysis of MR Elastography and Quantitative Fat-Water Imaging

Author:Bogdan Dzyubak  Jiahui Li  Sudhakar Venkatesh  Kevin Glaser  Alina Allen  Meng Yin  Richard Ehman  

Institution:Mayo Clinic  Mayo Clinic  

Session Type:Oral  

Session Date:Wednesday, 15 May 2019  

Session Time:13:30  

Session Name:Image Processing & Analysis  

Program Number:0836  

Presentation Time:14:30   

Room Number:Room 510A-D  

Computer Number:

Automated cloud-based workflow for quantification of MRI signal intensity – initial real-world clinical validation

Author:Marc Ramos  Vesna Prckovska  Paulo Rodrigues  Jinnan Wang  Franklin Moser  Markus Blank  Sheela Agarwal  Jacob Agris  David Moreno-Dominguez  

Institution:Bayer Radiology  Cedars Sinai Medical Center  QMENTA Inc.  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2470  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 172  

Automated Deep Learning based 3D Hip Segmentation in PD-weighted MR images of a large-scale cohort study

Author:Marc Fischer  Sven Walter  Christian Klinger  Thomas Küstner  Bin Yang  Mike Notohamiprodjo  Fritz Schick  

Institution:University Hospital Tübingen  University of Stuttgart  King's College London  King's College London  

Session Type:Oral  

Session Date:Wednesday, 15 May 2019  

Session Time:13:30  

Session Name:Image Processing & Analysis  

Program Number:0840  

Presentation Time:15:18   

Room Number:Room 510A-D  

Computer Number:

Automated perfusion lesion delineation in stroke: comparison with experts and alternative automated strategies

Author:Dave Saraswat  Jiun-Yiing Hu  Ivana Galinovic  Jochen Fiebach  Ahmed Khalil  

Institution:Charité – Universitätsmedizin Berlin  Humboldt Universität zu Berlin  Max Planck Institute for Human Cognitive and Brain Sciences  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2454  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 156  

Bayesian Hierarchical Modelling for Analyzing Neuroimaging Results

Author:Christopher Hammill  Benjamin Darwin  Darren Fernandes  Jason Lerch  

Institution:The Hospital for Sick Children  University of Toronto  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2451  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 153  

Comparison of Spatial Interpolation and Inpainting Methods for Estimation of Bad Fittings in Chemical Shift Imaging Data

Development of a Quantitative Assessment tool for Peripheral Artery Feature Extraction (pCafe)

Author:Li Chen  Thoetphum Benyakorn  Gador Canton  Niranjan Balu  Thomas Hatsukami  Jenq-Neng Hwang  Chun Yuan  

Institution:Thammasat University  University of Washington  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2468  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 170  

Image fusion of multiple independent MRI brain slabs to cover a whole Dugong brain in a small-bore, high-field pre-clinical scanner

Author:Simone Zanoni  Kenneth Ashwell  Andre Bongers  

Institution:The University of New South Wales  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2449  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 151  

Integrated image-space and Fourier-space analyses for unwrapping phase images of low signal-to-noise ratio

Author:Nan-kuei Chen  Pei-Hsin Wu  

Institution:university of arizona  University of Pennsylvania  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2450  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 152  

Knowledge-based definition of morphological alterations in brain MRI through the angle-based thresholding approach

Radiomic features from enhancing tumor on pre-treatment multiparametric MRI scans are predictive of response to chemo-radiation therapy in Glioblastoma and are associated with histological phenotypes

Author:Ruchika Verma  Ramon correa  Virginia Hill  Niha Beig  Abdel Mahammedi  Marwa Ismail  Anant Madabhushi  Pallavi Tiwari  

Institution:Case Western Reserve University  Cleveland Clinic  

Session Type:Oral  

Session Date:Wednesday, 15 May 2019  

Session Time:13:30  

Session Name:Image Processing & Analysis  

Program Number:0835  

Presentation Time:14:18   

Room Number:Room 510A-D  

Computer Number:

Reduction of Gibbs artifacts with the Domain Decomposition Fourier Continuation Method

Author:Ruonan Shi  Jae-Hun Jung  Ferdinand Schweser  

Institution:University at Buffalo, The State University of New York  Ajou University  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2459  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 161  

Scanner Variability of MR Based Radiomics Features

Author:Peter Gibbs  Eun Sook Ko  Meredith Sadinski  Elizabeth Morris  

Institution:Memorial Sloan Kettering Cancer Center  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2456  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 158  

Segmentation-aware adversarial synthesis for registration of histology to MRI

Author:Matteo Mancini  Yuankai Huo  Bennett Landman  Juan Eugenio Iglesias  

Institution:University College London  Vanderbilt University  

Session Type:Oral  

Session Date:Wednesday, 15 May 2019  

Session Time:13:30  

Session Name:Image Processing & Analysis  

Program Number:0832  

Presentation Time:13:42   

Room Number:Room 510A-D  

Computer Number:

Segmenting Brain Metastases Using Deep Learning on Multi-Modal MRI

Author:Darvin Yi  Endre Grøvik  Michael Iv  Elizabeth Tong  Greg Zaharchuk  Daniel Rubin  

Institution:Oslo University Hospital  Stanford University  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2457  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 159  

SEGUE Unwraps MRI Phase Images Acquired in Mouse Brains at 9.4 Tesla Faster than PRELUDE

Author:Anita Karsa  Rosie Goodburn  Karin Shmueli  

Institution:The Royal Marsden NHS Foundation Trust  University College London  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2453  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 155  

Signal Enhancement and Optimum Receiver Arrays For Human Hyperpolarized 13C MR Spectroscopic Imaging

Signal intensity form of Tofts model for quantitative analysis of dynamic contrast enhanced MRI data

Author:Xiaobing Fan  Aritrick Chatterjee  Aytekin Oto  Gregory Karczmar  

Institution:University of Chicago  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2466  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 168  

Simultaneous Voxel-based Magnetic Susceptibility and Morphometry Analysis in Patients with Alzheimer’s Disease

Author:Hirohito Kan  Yuto Uchida  Nobuyuki Arai  Yoshino Ueki  Yoshihiro Akagawa  Harumasa Kasai  Yasujiro Hirose  Noriyuki Matsukawa  Yuta Shibamoto  

Institution:Nagoya City University  Nagoya City University Hospital  Toyokawa City Hospital  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2469  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 171  

Spherical harmonics coefficients estimation using deep neural network

Author:Zhangxuan Hu  Zhe Zhang  Yuhui Xiong  Chun Yuan  Hua Guo  

Institution:Beijing Tiantan Hospital, Capital Medical University  Beijing Tiantan Hospital, Capital Medical University  Tsinghua University  Tsinghua University  University of Washington  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2461  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 163  

Spherical U-Net for Infant Cortical Surface Parcellation

Author:Fenqiang Zhao  Shunren xia  Zhengwang Wu  Li Wang  Weili Lin  John Gilmore  Dinggang Shen  Gang Li  

Institution:University of North Carolina at Chapel Hill  Zhejiang University  

Session Type:Oral  

Session Date:Wednesday, 15 May 2019  

Session Time:13:30  

Session Name:Image Processing & Analysis  

Program Number:0831  

Presentation Time:13:30   

Room Number:Room 510A-D  

Computer Number:

Super-resolution 3D MRSI for Mapping 2HG and Tumor Metabolism in Patients with Mutant IDH Glioma

SuperSurfer: Cortical surface reconstruction using super-resolution anatomical MR images synthesized by deep learning

Author:Qiyuan Tian  Berkin Bilgic  Qiuyun Fan  Chanon Ngamsombat  Akshay Chaudhari  Ned Ohringer  Yuxin Hu  Thomas Witzel  Kawin Setsompop  Jonathan Polimeni  Susie Huang  

Institution:Massachusetts General Hospital, Harvard Medical School  Stanford University  Massachusetts Institute of Technology  

Session Type:Oral  

Session Date:Wednesday, 15 May 2019  

Session Time:13:30  

Session Name:Image Processing & Analysis  

Program Number:0834  

Presentation Time:14:06   

Room Number:Room 510A-D  

Computer Number:

TemplateFlow: Standardizing standard 3D spaces in neuroimaging

Author:Oscar Esteban  Rastko Ciric  Christopher Markiewicz  Yaroslav Halchenko  Mathias Goncalves  Satrajit Ghosh  Russell Poldrack  Krzysztof Gorgolewski  

Institution:Dartmouth College  Massachusetts Institute of Technology: MIT  Stanford University  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2452  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 154  

Test-retest reliability of resting-state brain small-world network properties across different data processing and modeling strategies

Author:Qianying Wu  Ya Chai  Hui Lei  Fan Yang  Jieqiong Wang  Xue Zhong  John Detre  Hengyi Rao  

Institution:University of Pennsylvania  University of Science and Technology of China  

Session Type:Digital Poster  

Session Date:Tuesday, 14 May 2019  

Session Time:08:15  

Session Name:Image Processing & Analysis  

Program Number:2467  

Presentation Time:08:15   

Room Number:Exhibition Hall  

Computer Number:Computer 169