Benito de Celis Alonso1, José Gerardo Suárez García2, Po Wah-So3, Javier Miguel Hernández López1, Silvia Sandra Hidalgo Tobón4,5, and Pilar Dies Suárez6
1Faculty of Physical and Mathematical Sciences, Benemérita Universidad Autónoma de Puebla, BUAP, Puebla, Mexico, 2Benemérita Universidad Autónoma de Puebla, BUAP, Puebla, Mexico, 3Department of Neuroimaging, Institute of Psychiatry, King´s College London, London, United Kingdom, 4Facultad de Ciencias, UAM Campus Iztapalapa, CDMX, Mexico, 5Imaging Department., Hospital Infantil de México, federico Gómez, CDMX, Mexico, 6Imaging Department, Hospital Infantil de México Federico Gómez, CDMX, Mexico
Synopsis
Keywords: AI/ML Software, Fat
Motivation: Currently there is a widely validated commercial semi-automatic method called AMRA® Researcher, which quantifies ASAT and VAT. However, it is not accessible to everyone due to the necessary economic means.
Goal(s): To develop an automatic, simple and free methodology to quantify ASAT and VAT, with at least the same precision as AMRA® Researcher.
Approach: Preprocessing and simple CNNs applied on in-phase Dixon MRI sequences were proposed for quantify VAT and ASAT.
Results: There were no significant differences between the quantifications from AMRA Researcher and our methodology. Both obtained a high correlation and our methodology reached the precision of AMRA® Researcher.
Impact: Our automatic, simple and free ASAT
and VAT quantification methodology, studying MRI through preprocessing and
CNNs, achieved the precision of the commercial semi-automatic AMRA Researcher
method. After future independent validation, this could become an accessible
tool to assist specialists.
Introduction: Although BMI is an
international standard measure for obesity in both children and adults, it does
not describe the amount and distribution of body fat. In children, it is known
that a greater amount of visceral adipose tissue (VAT) compared to abdominal
subcutaneous adipose tissue (ASAT) is related to the early onset of diseases,
as well as a higher risk of obesity in adulthood 1. Currently there
is a widely validated commercial semi-automatic method called AMRA® Researcher,
which allows VAT and ASAT to be quantified by studying Dixon MRI sequences 2.
However, it is not accessible to everyone due to the financial investment
involved.
Objective: Our goal was to develop
an automatic, simple and free method to quantify ASAT and VAT, with at least
the same precision as AMRA® Researcher, this being equal to 0.17 L for VAT and
0.33 L for ASAT, according to the reports obtained from the quantifications
made by AMRA Researcher on our own database.
Methods: A proprietary database was
studied, consisting of in-phase Dixon MRI sequences of 78 Mexican children,
aged 7 to 9 years, with different weight profiles (3 were underweight (BMI
percentile < 5), 42 were normal weight (BMI percentile 5 - 85), 17
overweight (BMI percentile 85-95) and 16 obese (BMI percentile >95). The
subjects were randomly separated into training, validation and testing subsets,
containing 42, 18 and 18 subjects respectively. Since the full body scan of
each subject was made up of several overlapping volumes, alignment and joining
processes was carried out (Fig. 1). Subsequently, other preprocessing
techniques was applied on each axial slice of a joined volume, in order to
perform an approximate separation of ASAT and VAT. The result of the separation
was two 3D volumes that contained approximately only ASAT and VAT respectively
(Fig. 2). These two 3D volumes did not necessarily contain all the ASAT and VAT
of the subject studied. Afterwards, two (what we call) Total Intensity Maps
were created, which were 2D images that resulted from the sum of the
intensities of the voxels of the aforementioned 3D volumes (Fig. 3). Two simple
Convolutional Neural Networks (CNNs) architectures were proposed, whose inputs
were the two Total Intensities Maps of each subject (Fig. 4). These networks
were trained, validated and tested with the corresponding subjects. The outputs
of the networks were the quantifications of VAT and ASAT respectively. The
quantifications made by AMRA Researcher and those made by our methodology were
compared using statistical tests, correlations plots and Bland-Altam graphs.
Results: Considering the
quantifications from testing subjects, there were no significant differences (p
> 0.05) between the quantifications made by AMRA Researcher and those made
by our methodology. Furthermore, both reached a high correlation. Our
methodology obtained a precision for VAT and ASAT equal to 0.17 L and 0.32 L,
therefore equaling the precision of AMRA® Researcher (Fig. 5).
Conclusions: Although our
methodology achieved the precision of AMRA Researcher, the second is a widely
validated method. However, our methodology, being automatic, simple, with low
demand for computational resources and free, allows its validation by future
independent works, after which, it could be useful as an accessible tool that
assists specialists in diagnosis, follow-up and prevention of childhood
obesity.Acknowledgements
We would like to thank CONAHCyT for their support of the postdoctoral expenses of Dr. José Gerardo Suárez García. References
1. Neeland I, Ross R, Després
J, et al. Visceral and ectopic fat, atherosclerosis, and cardiometabolic
disease: a position statement. Lancet Diabetes Endo. 2019; 7(9):
715-725.
2. Borga M, West J, Bell J, et
al. Advanced body composition assessment: From body mass index to body
composition profiling. J Invest Med. 2018; 66(5): 1-9.