Maria Engel1, Lars Kasper2, and Derek Jones1
1Cardiff University Brain Research Imaging Centre, Cardiff University, Cardiff, United Kingdom, 2Toronto NeuroImaging Facility, Department of Psychology, University of Toronto, Toronto, ON, Canada
Synopsis
Keywords: New Trajectories & Spatial Encoding Methods, Parallel Transmit & Multiband, CAIPIRINHA, SMS
Motivation: For Multiband and 3D EPI (and spirals), k-space sampling patterns used to date, were either optimized heuristically (blipped-CAIPIRINHA) or only available for a discrete subset of imaging parameters (T-Hex).
Goal(s): To find the optimum sampling pattern for arbitrary imaging parameters.
Approach: We propose the packing density of the k-space grid in the phase-encoding plane as a metric to assess the quality of a sampling pattern, since it minimizes the noise amplification for spherical objects. Furthermore, we choose L’s and Δ’s (blipped-CAIPIRINHA nomenclature) as real-valued numbers.
Results: The novel sampling patterns achieve more homogeneous k-space coverage (up to 30% higher packing density) than blipped-CAIPIRINHA.
Impact: The proposed method generates
k-space sampling patterns that have potential to maximize the SNR yield per
unit time in Multiband and 3D imaging by providing the most homogeneous k-space
sampling for an arbitrary given set of imaging parameters.
Introduction
For rapid 3D and single-shot Multiband (MB) imaging, the most common
method to sample the phase-encoding (PE) plane in k-space is blipped-CAIPIRINHA1, providing oblique grids with
varying SNR efficiency2. Sampling on tilted hexagonal
(T-Hex) grids3 provides optimal sampling
patterns in terms of g-factor noise amplification by maximizing the circle packing
density of the lattice4, resulting in hexagonal
tiling of aliases in the image domain5. However, for a given FOV and resolution,
T-Hex offers only a discrete set of viable undersampling factors. Yet, when
optimising SNR, contrast and effective resolution, it is desirable to choose
these parameters flexibly. Here we propose a way of maximizing the packing
density, and thus sampling efficiency, for arbitrary undersampling factors - bringing sampling into the Holocene.Methods
MB encoding requires
a lower resolution in z direction than full 3D encoding5 (given by the distance
$$$Δz$$$ between
$$$N$$$ simultaneously
excited slices), but the same sampling density. Therefore, this work focuses on
MB imaging.
A) Blipped-CAIPIRINHA as introduced initially1,6, samples k-space on $$$L$$$ distinct planes in
through-plane (here z) direction (Figure 1A) with $$$N>L\in\mathbb{N}$$$ and all planes being visited repetitively
in monotonically increasing order. This is realized through
additional z-gradient-blips after each frequency-encoding (FE) line: $$$L-1$$$ small blips in +z direction and one larger blip -z direction, repeated sequentially.
B) Blipped-CAIPIRINHA’s
SNR can be enhanced by shuffling the order of visited k-space planes2 (Figure 1B) with
$$$Δ\in\mathbb{N}$$$ defining the
distance between consecutively visited planes7 in multiples of
$$$Δk=2π/FOV$$$, i.e., $$$Δ=N/L$$$ where now
$$$L\in\mathbb{Q}$$$.
The optimum
$$$L$$$ or
$$$Δ$$$ for both
approaches have so far been determined heuristically.
We propose to choose them as real-valued
numbers ($$$L, Δ\in\mathbb{R}$$$) and such that the PE grid exhibits maximum circle
packing density,
$$$D$$$.
For an oblique lattice (Figure 2),
$$$D$$$ is the
fraction of the surface covered, if a circle is centred around each lattice point and all circles are of the same
dimension and as large as possible without generating overlap. It can be
computed as the ratio of the area of one such circle to the area of a primitive
unit cell of the lattice:
$$D=\frac{A_{\text{circle}}}{A_{\text{unit cell}}}$$
$$$A_{\text{unit cell}}$$$ is independent of the choice of $$$L$$$ and $$$Δ$$$:
$$A_{\text{unit cell}}=\frac{2\pi\Delta{k}}{\Delta{z}}$$
with the in-plane PE-spacing
$$\Delta k=\frac{2\pi{R_{\text{in-plane}}}}{\text{FOV}_{\text {in-plane}}}$$
and the in-plane undersampling factor $$$R_{\text{in-plane}}$$$.
$$$A_{\text{circle}}$$$ depends on the sampling pattern:
$$A_{\text{circle}}=\frac{\pi}{4}d_{\min}{ }^2$$
where $$$d_{\min}$$$ is the smallest distance between adjacent lattice
points and is computed from all possible distances as
$$d_{\min}(L)=\min_{m\in\mathbb{Z}}\left(\sqrt{(m\cdot\Delta{k})^2+\left(\frac{2\pi}{\Delta{z}}\right)^2\left(\frac{m}{L}-\left\lfloor\frac{m}{L}\right\rfloor\right)^2}\right)$$
The optimum sampling pattern (maximum $$$D$$$) maximizes $$$d_{\min}$$$
$$\max_{L\in\mathbb{R}}\left(d_{\min}(L)\right)$$
The total
undersampling factor can be chosen freely as
$$$R_{\text{total}}=N\cdot{R_{\text {in-plane }}}$$$
where
$$$R_{\text{in-plane}}\in\mathbb{R}$$$. In particular, $$$R_{\text{in-plane}}$$$ can take values < 1 if the imaging
situation requires/allows for a higher acceleration ($$$N$$$) than total undersampling factor ($$$R_{\text{total}}$$$). The term $$$R_{\text{in-plane}}$$$ is
used to conform with previous descriptions of the subject matter, although for
$$$L>1$$$ a
clear distinction between in-plane and through-plane undersampling is impossible2.
Matlab
code for all computations and creation of figures is available under https://git.cardiff.ac.uk/sapme1/holocenesampling.Results
Gif 1
shows feasible grids and resulting
$$$D$$$ for fixed imaging parameters ($$$FOV_{\text{in-plane}}=22.0~cm, R_{\text{in-plane}}=1, N=6, \Delta{z}=1.83~cm$$$). Blipped-CAIPIRINHA reaches maximally
$$$D=65\%$$$ ($$$L=4$$$), whereas the proposed method reaches
$$$D=81\%$$$ ($$$L=3.55$$$).
For a range of scenarios, Figure 3 shows the maximum
$$$D$$$
reached with the proposed method and with blipped-CAIPIRINHA,
the former outperforming almost always the latter.
For high $$$R_{\text{total}}$$$, both methods
yield identical results. The convergence point occurs the earlier, the smaller
$$$N$$$ – or in 3D sampling terms, the smaller the k-space volume sampled within one readout.
Starting at some (even higher) $$$R_{\text{total}}$$$, the packing density
computation as proposed here becomes degenerate as the smallest distance
between grid points is larger than the k-space slab that needs to be sampled
$$$d_{\min}>2\pi/\Delta z$$$ (here only seen for $$$N=2$$$, where curve stops
at $$$R\sim7$$$).
The proposed method coincides with T-Hex whenever
optimum hexagonal sampling is feasible, which happens more frequently for lower $$$R_{\text{total}}$$$ and higher $$$N$$$.
Figure 4
displays relevant grids for the case marked with a dashed line in Figure 3.Discussion
The key contribution of our method is that it delivers the maximally feasible packing density of aliases in the image domain regardless of the given imaging parameters. Whereas T-Hex provides the optimum packing density, it is restricted to discrete undersampling factors/readout times. The current work will output T-Hex, wherever possible, and otherwise maximally close patterns. For the $$$N=5$$$ example shown here, T-Hex would provide $$$R_{\text{total}}=6.2,3.3,2.2...$$$ Intermediate undersampling factors might be desirable if $$$R=3.3$$$ requires excessive readout durations (T2-decay and intra-voxel dephasing) and $$$R=6.2$$$ entails too little SNR, given receive coil geometry, field strength and imaging application.Acknowledgements
EPSRC (grant
EP/M029778/1); The Wolfson Foundation; Wellcome Trust
Investigator Award (096646/Z/11/Z); Wellcome Trust Strategic Award
(104943/Z/14/Z); Siemens Healthineers;References
1. Setsompop K,
Gagoski BA, Polimeni JR, Witzel T, Wedeen VJ, Wald LL. Blipped-Controlled
Aliasing in Parallel Imaging (blipped-CAIPI) for simultaneous multi-slice EPI
with reduced g-factor penalty. Magn Reson Med. 2012;67(5):1210-1224.
doi:10.1002/mrm.23097
2. Narsude
M, Gallichan D, van der Zwaag W, Gruetter R, Marques JP. Three-dimensional echo
planar imaging with controlled aliasing: A sequence for high temporal
resolution functional MRI. Magn Reson Med. 2016;75(6):2350-2361.
doi:10.1002/mrm.25835
3. Engel
M, Kasper L, Wilm B, et al. T-Hex: Tilted hexagonal grids for rapid 3D imaging.
Magn Reson Med. 2021;85(5):2507-2523. doi:10.1002/mrm.28600
4. Kepler
J. Strena, Seu De Nive Sexangula. In: Francofurti Ad Moenum: Godefridum
Tampach. ; 1611.
5. Mersereau
RM. The processing of hexagonally sampled two-dimensional signals. Proc IEEE.
1979;67(6):930-949. doi:10.1109/PROC.1979.11356
6. Zahneisen
B, Poser BA, Ernst T, Stenger VA. Three-dimensional Fourier encoding of
simultaneously excited slices: Generalized acquisition and reconstruction
framework. Magn Reson Med. 2014;71(6):2071-2081. doi:10.1002/mrm.24875
7. Breuer
FA, Blaimer M, Mueller MF, et al. Controlled aliasing in volumetric parallel
imaging (2D CAIPIRINHA). Magn Reson Med. 2006;55(3):549-556.
doi:10.1002/mrm.20787