Ruoxun Zi1, Bili Wang1, Jerzy Walczyk1, Ryan Brown1, Catherine Petchprapa1, James Fishbaugh2, Guido Gerig2, Kai Tobias Block1, and Riccardo Lattanzi1
1The Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, NY, United States, 2Department of Computer Science and Engineering, New York University Tandon School of Engineerin, Brooklyn, NY, United States
Synopsis
Keywords: Joints, MSK, Wrist
Dynamic MRI can be useful for evaluation of wrist
instability. However, most available real-time MRI methods are either limited due
to their 2D nature or provide only low temporal resolution and insufficient
image quality. Here, we propose a novel approach for volumetric dynamic wrist examination
by assembling 2D real-time data into 3D snapshots using MRI-visible markers. The
method has been demonstrated for ulnar-radial deviation using a flexible
wrist coil and 3D-printed support platform for guiding motion. Future work will
use a high-resolution static MRI as morphological prior to segment bones on the
dynamic volumes and allow for quantitative kinematic assessment.
Introduction
Static
MRI examination of the wrist, as performed routinely in clinical practice, provides
excellent spatial resolution and contrast for characterizing bone and soft
tissue1. However, initial stages of wrist instability often manifest
only during active motion and do not show visible abnormalities on routine
static examinations. Therefore, dynamic examination is desirable for patients
experiencing pain during movement of the wrist, due to snapping or sudden
changes in the intercarpal alignment2,3. Real-time MRI techniques
have been proposed for accomplishing this task2. However, the 2D
nature of most real-time methods makes it difficult to capture out-of-plane
translations or rotations of the carpal bones. Existing dynamic 3D MRI methods,
on the other hand, do not reach the required temporal resolution and image quality
to properly capture sudden and rapid motion abnormalities.
Here,
we describe a novel approach for dynamic volumetric wrist examination by assembling
2D real-time data into 3D snapshots. We used a custom-developed wrist platform,
which ensures consistent repetitive movement and includes MRI-visible markers for automatic alignment of the 2D slices. The technique was demonstrated for continuous
ulnar-radial deviation. Methods
Coil
and Platform Design
A custom-tailored wrist coil was created by repurposing
a "blanket" coil that was built previously in our center4,5. The
wrist coil was designed to wrap tightly around the wrist in the fashion of a
medical support brace. The coil has eight high-impedance elements (ø=6cm)
that are geometrically arranged in 2 rows of 4 elements. A support platform was designed with a 3D
printer to guide the wrist movement and ensure consistency over multiple
repetitions. The forearm is immobilized using Velcro straps and cushions, enforcing
that only the wrist joint moves during maneuvers (Fig 1b/c). Two tubes were integrated
into the moving part of the platform and filled with pineapple juice, whose bright
MR signal (Fig 1d) was used to track the wrist position during motion.
Experiments
To
demonstrate feasibility, we scanned healthy volunteers (after obtaining
informed consent) on a clinical 3T scanner (MAGNETOM Prisma, Siemens
Healthineers). Volunteers were asked to perform continuous ulnar-radial deviation
whenever gradient noise could be heard. Dynamic data were acquired with an
RF-spoiled 2D FLASH sequence, which uses radial sampling with interleaved acquisition
order over five successive images6. Each interleave included 13
equidistant angular projections covering 360°. The acquisition scheme was repeated 50 times for
each slice to properly capture the continuous motion. Spectral fat suppression
was performed prior to each repetition.
24 slices were sequentially acquired in coronal orientation. Relevant parameters included: FOV 220x220mm2, resolution
1x1mm2, slice thickness 2mm, FA 4°, TR/TE 3.69/2.21ms, BW 500Hz/px, total
duration 5:35min.
Image
Reconstruction
Dynamic
images were reconstructed slice-by-slice using the GRASP algorithm7,
which applies a total-variation constraint along the time dimension. 13
projections were combined into each image frame, resulting in a temporal
resolution of 48ms/frame.
To fuse
the dynamic 2D images into a dynamic volume, the position marker was segmented in
each image using a U-Net8. The Jaccard similarity index was
calculated for segmentation masks of each frame from the different slices. Frames
with the highest similarity score were assigned to the same wrist position and stacked
into a 3D volume.Results
For
reference, Fig 1d shows a static high-resolution scan acquired with a radial 3D
GRE sequence using the 8-channel wrist coil, which demonstrates the high SNR provided
by the coil.
Fig
2 shows a real-time movie of the continuous ulnar-radial deviation maneuver in one
slice, depicting motion of the carpal bones with high accuracy. The position
marker is visible in each frame and allows identifying the angular position of
the wrist.
The
automatic U-Net segmentation and resulting slice alignment is shown in Fig 3
for one angular position. After the alignment, the position marker (yellow
color) remains in a consistent position for all slices. Fig 4 shows the fused dynamic
volume for different wrist positions. Carpal bones and metacarpal bones are
well-aligned, as seen especially in the two axial reformats, which demonstrates
the efficiency of the proposed marker-based alignment procedure.Discussion
Here,
we described a new idea to obtain dynamic 3D wrist images using a 2D real-time
sequence and position markers to align images from different slices. The
approach uses a 3D-printed platform that can be positioned freely in the
scanner to maximize patient comfort and does not require additional optical or
electronical sensors. Future work will focus on extracting the trajectories of carpal
bones during continuous movement. Given the high contrast obtained with fat
suppression and the low anisotropicity compared to previous approaches, individual
carpal bones can be segmented in each dynamic volume using tools such as itkSNAP9.
To improve the accuracy of the kinematic assessment, we plan to utilize a
static high-resolution scan (similar to Fig 1d) for generating a 3D model of
the wrist bones (Fig 5), which can then be used as strong morphological prior for
determining the shape and location of individual bones in the dynamic volumes10.
To this end, a next step will be to find a poly-rigid transformation model for
mapping the reference carpal bone shapes onto the dynamic volumes to obtain dynamic
series of binary segmentations for each carpal bone, which represent the
kinematic motion to be analyzed.Acknowledgements
This
work was supported in part by NIH R21 AR080325 and performed under the rubric
of the Center for Advanced Imaging Innovation and Research (CAI2R, www.cai2r.net),
an NIBIB National Center for Biomedical Imaging and Bioengineering (NIH P41
EB017183).References
1. Vassa
R, Garg A, Omar IM. Magnetic resonance imaging of the wrist and hand. Polish
Journal of Radiology. 2020 Aug 26;85(1):461-88.
2. Frahm
J, Voit D, Uecker M. Real-time magnetic resonance imaging: radial gradient-echo
sequences with nonlinear inverse reconstruction. Investigative Radiology. 2019
Dec 1;54(12):757-66.
3. Shaw
CB, Foster BH, Borgese M, Boutin RD, Bateni C, Boonsri P, Bayne CO, Szabo RM,
Nayak KS, Chaudhari AJ. Real-time three-dimensional MRI for the assessment of
dynamic carpal instability. PloS one. 2019 Sep 19;14(9):e0222704.
4. Zhang B, Cloos MA, Yang J, Nguyen TD, Brown R.
Ultra-flexible 3T HIC Receive Array for Carotid Imaging. In2019 International
Conference on Electromagnetics in Advanced Applications (ICEAA) 2019 Sep 9 (pp.
0459-0464). IEEE.
5. Ngyuen T, Zhang B, Wen Y, Brown R. A lightweight
and ultra-flexible "blanket" coil design for carotid artery wall
imaging. Proceedings of the International Society for Magnetic Resonance in
Medicine Annual Meeting and Exhibition, 2019, Montreal, Canada. p. 2079.
6. Zhang
S, Block KT, Frahm J. Magnetic resonance imaging in real time: advances using
radial FLASH. J Magn Reson Imaging. 2010 Jan;31(1):101-9.
7. Feng
L, Grimm R, Block KT, Chandarana H, Kim S, Xu J, Axel L, Sodickson DK, Otazo R.
Golden‐angle radial sparse parallel MRI: combination of compressed sensing,
parallel imaging, and golden‐angle radial sampling for fast and flexible
dynamic volumetric MRI. Magnetic resonance in medicine. 2014 Sep;72(3):707-17.
8. Ronneberger
O, Fischer P, Brox T. U-net: Convolutional networks for biomedical image
segmentation. In International Conference on Medical image computing and
computer-assisted intervention 2015 Oct 5 (pp. 234-241). Springer, Cham.
9. Yushkevich PA, Piven J, Hazlett HC, et al.
User-guided 3D active contour segmentation of anatomical structures:
Significantly improved efficiency and reliability. NeuroImage
2006;31:1116–1128.
10. Abbas B, Fishbaugh J, Petchprapa C,
Lattanzi R, Gerig G. Analysis of the kinematic motion of the wrist from 4D
magnetic resonance imaging. In: undefined. Vol. 10949. Proc.SPIE; 2019. doi:
10.1117/12.2513131.