Leighton BARNDEN1, Kiran Thapaliya1, Donald Staines1, Jiasheng SU1, and Sonya Marshall-Gradisnik1
1NCNED, Griffith University, Southport, QLD, Australia
Synopsis
Diffusion metrics from brain Diffusion Tensor
Imaging (DTI) characterise axonal structure and include fractional anisotropy
(FA), axial diffusivity (AD) and radial diffusivity (RD). Cross-sectional
studies of DTI metric maps apply voxel-based statistical analysis of the metric
values generated by standard MRTrix and FSL algorithms and assumes that the
global values for these metrics are consistent across the populations analysed.
This study found that inter-subject global levels vary appreciably for the full
range of diffusion metrics. Removal of the variance associated with the global levels
markedly improved the statistical inference for differences in a study of
ME/CFS patients and healthy controls.
Introduction
Cross-sectional
DTI studies have demonstrated limited differences in diffusion metrics between
ME/CFS and healthy controls (HC) 1.
We use that study to investigate inter-subject variability in global levels and
the influence on statistical inference of removing this variance.Methods
The study was approved by the local
human ethics (HREC/15/QGC/63 and GU:2014/838) committee of Griffith University and the
Gold Coast University Hospital where scanning was performed.
Written informed consent was obtained from 18 ME/CFS patients, meeting ICC
criteria, and 26 gender-matched healthy controls.
Voxel-based group comparisons were
performed with SPM12 (https://www.fil.ion.ucl.ac.uk/spm/software/spm12/). To report
representative findings, we only consider FA, AD and RD and pool the ME/CFS and
HC subjects (reported differences were small1). After the standard analysis, we
applied the Voxel Based Iterative Sensitivity (VBIS) algorithm 2 to compute the population variance for
each voxel and define a region-of-interest as those voxels with variance below
the median. Figure 1A shows maps of the population variance for FA and AD and
the white boundary indicates the median variance which defined the
region-of-interest. We computed the mean in that region for all subjects and incorporated
it as a global value nuisance covariate in a repeat voxel-based comparison of the
two groups. Residual images were assessed to quantify the new global levels.
Distribution of global values before and after exclusion of global variance was
quantified by fitting the distribution to a Gaussian and computing FWHM/mean %.Results
Figure 1A shows that the voxel variance
was greatest in Gray Matter and CSF for both FA and AD. The region where variance
< median was mostly white matter. Similar results were found for RD and
other metrics. Figure 1B shows frequency of occurrence histograms for global
values in the 44 subjects and include the width of the histograms (from the
fitted gaussian) as a percentage of the mean. For FA the distribution width was
40% for standard analysis but fell to 1.6% after removing variance associated
with the global value. For AD the widths were 7.5% and 0.23% and for RD 8.4%
and 1.0%.Discussion
We estimated global levels for 44
subjects of 3 diffusivity metrics using the VBIS approach
2. A remarkable intersubject variability - up to 40% - in
global levels was detected in all diffusivity metrics, although here we only report
results for three (two in Fig 1B). Controlling for these levels in a comparison
of ME/CFS and HC subjects markedly improved statistical inference. We must
therefore question whether the internal normalization techniques of the MRTrix
and FSL algorithms are adequate. This analysis was based on the assumption that
axonal diffusivity properties will be similar across individual humans.Conclusion
Standard cross-sectional voxel-based
comparisons of diffusivity metrics are affected by a surprisingly large
inter-subject variability in their global levels. Controlling for this
variability dramatically enhances statistical inference.Acknowledgements
We thank the patients and healthy
controls who donated their time and effort to participate in this study. This
study was supported by the Stafford Fox Medical Research Foundation, the Judith
Jane Mason Foundation (MAS2015F024), Mr. Douglas Stutt, and the Blake-Beckett
Foundation. The financial support did not affect any aspect of the study.References
1. Thapaliya,
K., Marshall-Gradisnik, S., Staines, D. & Barnden, L. Diffusion tensor
imaging reveals neuronal microstructural changes in myalgic encephalomyelitis/chronic
fatigue syndrome. Eur. J. Neurosci. 54, 6214–6228 (2021).
2. Abbott, D. F., Pell, G. S., Pardoe, H.
& Jackson, G. D. Voxel-Based Iterative Sensitivity (VBIS): methods and a
validation of intensity scaling for T2-weighted imaging of hippocampal
sclerosis. NeuroImage 44, 812–819 (2009).