Simon Reichert1, Dennis Kleimaier1, and Lothar Schad1
1Computer Assisted Clinical Medicine, Heidelberg University, Mannheim, Germany
Synopsis
This work presents an open source
simulation framework of spin-3/2 NMR dynamics for isotropic and anisotropic environments,
and hard pulses. The flexible, modular structure provides a computationally
efficient framework to investigate in detail MR signal characteristics using arbitrary
pulse sequences. Comparison of simulated and measured data showed a good
agreement for the TQTPPI sequence using 23Na. The simulation
framework is available as open source on GitHub (https://github.com/SmnReichert/PhaseCycleSim).
Introduction
The sodium triple-quantum (TQ) signal represents a unique intracellular sensitive biomarker for cell viability due to its intrinsic selectivity to interactions of sodium ions with proteins. To separate the TQ coherence from other coherences phase cycled pulse sequences, such as the TQ time proportional phase incrementation (TQTPPI) sequence1, are used. The acquired signal is a combination of various coherences from multiple relaxation pathways, which complicates the signal interpretation. Hence, a simulation framework of spin-3/2, sodium, NMR dynamics provides a unique tool to characterize/quantify the signal components. Simulation frameworks for sodium NMR pulse sequences have been already proposed2-5. However, these simulation frameworks are not optimized for fast computation of arbitrary phase cycles with multiple iterations and varying time delays.
In this study, we present a computationally efficient modular simulation framework for spin-3/2, sodium, NMR dynamics in biological environments and under hard RF pulses. This simulation framework provides a complete description of all signal components for arbitrary pulse sequences. Hence, pulse sequences can be optimized and the influence of sequence and probe parameters on the signal can be quantitatively evaluated. The performance of the simulation framework was compared with measurement data using TQTPPI pulse sequence and sodium nuclei.Methods
The dynamics of spin-3/2 nuclei are described by the Liouville-equation
$$\frac{d\sigma}{dt}=-i\left[H,\sigma\right],$$ where $$$H$$$ is the Hamiltonian of the system under study and the density operator $$$\sigma$$$ is expressed in terms of irreducible spherical tensor operators $$$T_{mn}$$$ (ISTOs).
In the following, an overview of the effect of hard RF pulses and relaxation is given. For a detailed description, see e.g.5-8. Fig.2 summarizes the allowed transitions for relaxation and hard RF pulses.
The effect of hard pulses with flip angle $$$\theta$$$ and phase $$$\phi$$$ on the ISTOs follows the equation
$$\hat{P}(\theta,\phi)T_{mn} = \sum\limits_{n'}{e^{i(n'-n)\phi}d^m_{n'n}(\theta)T_{mn'}}$$
with the Wigner matrix elements $$$d^m_{n'n}(\theta)$$$. Each change in coherence order results in a different sensitivity to the RF pulse phase. Multi-quantum (MQ) pulse sequences exploit this to separate different coherence orders.
The quadrupole interaction dominates the relaxation of quadrupole nuclei and follows the equation
$$ \frac{d\sigma}{dt}=-i\bar{\omega}_Q\left[T_{20},\sigma\right]-\sum\limits^2_{n=-2}{\left[T_{2n},\left[T_{2n}^\dagger,\sigma-\sigma_\text{eq}\right]\right]\left(J_n(\omega_0)+iK_n(\omega_0)\right)}$$
which yields a set of decoupled differential equations, shown in Fig.1. Off-diagonal terms correspond to the formation of MQ coherences. In an isotropic environment, i.e. $$$\bar{\omega}_Q=0$$$, all $$$T_{2n}$$$ tensors decouple from the other tensors. Solving
the differential equations leads to transition equations $$$T_{mn}\rightarrow\sum_{m'}{f^{(n)}_{m'm}(t)T_{m'n}}$$$ in arrow notation, where $$$f^{(n)}_{m'm}(t)$$$ are the transfer functions. In the slow motion
regime, i.e. $$$\omega_0\tau_c\gtrsim1$$$, the $$$f^{(n)}_{m'm}(t)$$$ are bi-exponential. The relevant transfer functions for transversal
relaxation pathways in isotropic environment are
$$
f^{(1)}_{11}(t)=\frac{1}{5}\left(3\exp\left(-\frac{t}{T_{2f}}\right)+2\exp\left(-\frac{t}{T_{2s}}\right)\right)\\
f^{(1)}_{13}(t)=f^{(1)}_{31}(t)=\frac{\sqrt{6}}{5}\left(\exp\left(-\frac{t}{T_{2f}}\right)-\exp\left(-\frac{t}{T_{2s}}\right)\right)\\
f^{(1)}_{33}(t)=\frac{1}{5}\left(2\exp\left(-\frac{t}{T_{2f}}\right)+3\exp\left(-\frac{t}{T_{2s}}\right)\right)
$$
with relaxation rates $$$\frac{1}{T_{2f}}=J_0+J_1$$$ (fast), $$$\frac{1}{T_{2s}}=J_1+J_2$$$ (slow). Here, $$$J_n=\omega^2_Q\cdot\frac{\tau_c}{1+(m\tau_c\omega_0)^2}$$$ are the spectral densities with the correlation time $$$\tau_c$$$ and the quadrupole interaction strength $$$\omega_Q$$$, which are
empirically parameters that together fully describe the system under
investigation. The formation of TQ coherences requires a slow motion regime $$$\omega_0\tau_c\gtrsim1$$$ causing biexponential relaxation.
The described
formulation provides a computational efficient treatment of quadrupolar NMR dynamics
under the separated effect of relaxation and hard RF pulses. Hence, a complete simulation
framework of arbitrary pulse sequences containing various RF pulses and
relaxation periods can be performed.
To evaluate the
performance of the simulation framework, the signal dynamics between simulated
and measured data was compared using the TQTPPI pulse sequence1 (Fig.3).
Measurements were performed at a 9.4T preclinical MRI (Bruker Biospec94/20)
equipped with a linear 1H/23Na Bruker volume coil. The
sample contained 154mM NaCl and [2,4,6]%w/w agarose phantom embedded into a
larger phantom to minimize inhomogeneity. The TQTPPI FID was non-linearly
fitted using1:
$$Y(t)=\sin(\omega t+\phi_1)\cdot\left(A_{SQ,1}e^{-t/T_{2f}}+A_{SQ,2}e^{-t/T_{2s}}\right)+A_{TQ}\sin(3\omega t+\phi_2)\left(e^{-t/T_{2f}}-e^{-t/T_{2s}}\right)+DC$$
where $$$Y(t)$$$ is the TQTPPI FID amplitude and, $$$A_{SQ,i}$$$ and $$$A_{TQ}$$$ are the SQ and TQ amplitudes, respectively.Results/Discussion
Fig.4 shows exemplary simulated
and measured TQTPPI spectra using a sample containing 4%w/w agarose and 154mM
NaCl. Tab.1 lists the fit results of simulated and measured data for all
samples. The relaxation times of simulated data yielded a good agreement with
measurement data, while the TQ/SQ ratio deviated less than 20%. The reasons for
this deviation are $$$B_0$$$ and $$$B_1$$$-inhomogeneities, which are not
accounted for in the simulation. $$$B_0$$$-inhomogeneity adds
auto-relaxation terms to the differential equation shown in Fig.1 and therefore
reduces the TQ signal, while $$$B_1$$$-inhomogneity also causes a loss
of TQ signal due to a $$$\sin^5(\theta)$$$ flip angle dependence of the TQ
signal. The simulation framework can account for $$$B_0$$$ and $$$B_1$$$-inhomogeneities using $$$B_0$$$ and $$$B_1$$$-maps. The excellent agreement
between simulated and measured data demonstrated that the system under study is
completely described by $$$\tau_c$$$ and $$$\omega_Q$$$.
The computationally efficient
modular simulation framework opens the field for novel pulse sequences,
improved signal suppression methods and unique phase cycles. Furthermore,
quantitative parameter studies of pulse sequence and sample parameters can be
performed without the need for lengthy measurements. This allows to obtain a
deeper understanding of the influence of specific parameters on the signal.Conclusion
To obtain a deeper understaning
of physical parameters affecting the signal of arbitrary quadrupolar NMR pulse
sequences, we present a flexible and modular simulation framework for quadrupolar
NMR dynamics. Comparison between simulated and measured data showed excellent
agreement using TQTPPI pulse sequence. Hence, the influence of sample and pulse
sequence parameters on quadrupole NMR signals of arbitrary pulse sequences can
be easily evaluated.Acknowledgements
No acknowledgement found.References
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