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Simulation of Spin-3/2 Quadrupole Nuclei Dynamics in Biological Environments for Arbitrary Pulse Sequences
Simon Reichert1, Dennis Kleimaier1, and Lothar Schad1
1Computer Assisted Clinical Medicine, Heidelberg University, Mannheim, Germany

Synopsis

This work presents an open source simulation framework of spin-3/2 NMR dynamics for isotropic and anisotropic environments, and hard pulses. The flexible, modular structure provides a computationally efficient framework to investigate in detail MR signal characteristics using arbitrary pulse sequences. Comparison of simulated and measured data showed a good agreement for the TQTPPI sequence using 23Na. The simulation framework is available as open source on GitHub (https://github.com/SmnReichert/PhaseCycleSim).

Introduction

The sodium triple-quantum (TQ) signal represents a unique intracellular sensitive biomarker for cell viability due to its intrinsic selectivity to interactions of sodium ions with proteins. To separate the TQ coherence from other coherences phase cycled pulse sequences, such as the TQ time proportional phase incrementation (TQTPPI) sequence1, are used. The acquired signal is a combination of various coherences from multiple relaxation pathways, which complicates the signal interpretation. Hence, a simulation framework of spin-3/2, sodium, NMR dynamics provides a unique tool to characterize/quantify the signal components. Simulation frameworks for sodium NMR pulse sequences have been already proposed2-5. However, these simulation frameworks are not optimized for fast computation of arbitrary phase cycles with multiple iterations and varying time delays.

In this study, we present a computationally efficient modular simulation framework for spin-3/2, sodium, NMR dynamics in biological environments and under hard RF pulses. This simulation framework provides a complete description of all signal components for arbitrary pulse sequences. Hence, pulse sequences can be optimized and the influence of sequence and probe parameters on the signal can be quantitatively evaluated. The performance of the simulation framework was compared with measurement data using TQTPPI pulse sequence and sodium nuclei.

Methods

The dynamics of spin-3/2 nuclei are described by the Liouville-equation
$$\frac{d\sigma}{dt}=-i\left[H,\sigma\right],$$ where $$$H$$$ is the Hamiltonian of the system under study and the density operator $$$\sigma$$$ is expressed in terms of irreducible spherical tensor operators $$$T_{mn}$$$ (ISTOs).

In the following, an overview of the effect of hard RF pulses and relaxation is given. For a detailed description, see e.g.5-8. Fig.2 summarizes the allowed transitions for relaxation and hard RF pulses.

The effect of hard pulses with flip angle $$$\theta$$$ and phase $$$\phi$$$ on the ISTOs follows the equation
$$\hat{P}(\theta,\phi)T_{mn} = \sum\limits_{n'}{e^{i(n'-n)\phi}d^m_{n'n}(\theta)T_{mn'}}$$
with the Wigner matrix elements $$$d^m_{n'n}(\theta)$$$. Each change in coherence order results in a different sensitivity to the RF pulse phase. Multi-quantum (MQ) pulse sequences exploit this to separate different coherence orders.

The quadrupole interaction dominates the relaxation of quadrupole nuclei and follows the equation
$$ \frac{d\sigma}{dt}=-i\bar{\omega}_Q\left[T_{20},\sigma\right]-\sum\limits^2_{n=-2}{\left[T_{2n},\left[T_{2n}^\dagger,\sigma-\sigma_\text{eq}\right]\right]\left(J_n(\omega_0)+iK_n(\omega_0)\right)}$$
which yields a set of decoupled differential equations, shown in Fig.1. Off-diagonal terms correspond to the formation of MQ coherences. In an isotropic environment, i.e. $$$\bar{\omega}_Q=0$$$, all $$$T_{2n}$$$ tensors decouple from the other tensors. Solving the differential equations leads to transition equations $$$T_{mn}\rightarrow\sum_{m'}{f^{(n)}_{m'm}(t)T_{m'n}}$$$ in arrow notation, where $$$f^{(n)}_{m'm}(t)$$$ are the transfer functions. In the slow motion regime, i.e. $$$\omega_0\tau_c\gtrsim1$$$, the $$$f^{(n)}_{m'm}(t)$$$ are bi-exponential. The relevant transfer functions for transversal relaxation pathways in isotropic environment are
$$
f^{(1)}_{11}(t)=\frac{1}{5}\left(3\exp\left(-\frac{t}{T_{2f}}\right)+2\exp\left(-\frac{t}{T_{2s}}\right)\right)\\ f^{(1)}_{13}(t)=f^{(1)}_{31}(t)=\frac{\sqrt{6}}{5}\left(\exp\left(-\frac{t}{T_{2f}}\right)-\exp\left(-\frac{t}{T_{2s}}\right)\right)\\ f^{(1)}_{33}(t)=\frac{1}{5}\left(2\exp\left(-\frac{t}{T_{2f}}\right)+3\exp\left(-\frac{t}{T_{2s}}\right)\right)
$$
with relaxation rates $$$\frac{1}{T_{2f}}=J_0+J_1$$$ (fast), $$$\frac{1}{T_{2s}}=J_1+J_2$$$ (slow). Here, $$$J_n=\omega^2_Q\cdot\frac{\tau_c}{1+(m\tau_c\omega_0)^2}$$$ are the spectral densities with the correlation time $$$\tau_c$$$ and the quadrupole interaction strength $$$\omega_Q$$$, which are empirically parameters that together fully describe the system under investigation. The formation of TQ coherences requires a slow motion regime $$$\omega_0\tau_c\gtrsim1$$$ causing biexponential relaxation.

The described formulation provides a computational efficient treatment of quadrupolar NMR dynamics under the separated effect of relaxation and hard RF pulses. Hence, a complete simulation framework of arbitrary pulse sequences containing various RF pulses and relaxation periods can be performed.

To evaluate the performance of the simulation framework, the signal dynamics between simulated and measured data was compared using the TQTPPI pulse sequence1 (Fig.3). Measurements were performed at a 9.4T preclinical MRI (Bruker Biospec94/20) equipped with a linear 1H/23Na Bruker volume coil. The sample contained 154mM NaCl and [2,4,6]%w/w agarose phantom embedded into a larger phantom to minimize inhomogeneity. The TQTPPI FID was non-linearly fitted using1:
$$Y(t)=\sin(\omega t+\phi_1)\cdot\left(A_{SQ,1}e^{-t/T_{2f}}+A_{SQ,2}e^{-t/T_{2s}}\right)+A_{TQ}\sin(3\omega t+\phi_2)\left(e^{-t/T_{2f}}-e^{-t/T_{2s}}\right)+DC$$
where $$$Y(t)$$$ is the TQTPPI FID amplitude and, $$$A_{SQ,i}$$$ and $$$A_{TQ}$$$ are the SQ and TQ amplitudes, respectively.

Results/Discussion

Fig.4 shows exemplary simulated and measured TQTPPI spectra using a sample containing 4%w/w agarose and 154mM NaCl. Tab.1 lists the fit results of simulated and measured data for all samples. The relaxation times of simulated data yielded a good agreement with measurement data, while the TQ/SQ ratio deviated less than 20%. The reasons for this deviation are $$$B_0$$$ and $$$B_1$$$-inhomogeneities, which are not accounted for in the simulation. $$$B_0$$$-inhomogeneity adds auto-relaxation terms to the differential equation shown in Fig.1 and therefore reduces the TQ signal, while $$$B_1$$$-inhomogneity also causes a loss of TQ signal due to a $$$\sin^5(\theta)$$$ flip angle dependence of the TQ signal. The simulation framework can account for $$$B_0$$$ and $$$B_1$$$-inhomogeneities using $$$B_0$$$ and $$$B_1$$$-maps. The excellent agreement between simulated and measured data demonstrated that the system under study is completely described by $$$\tau_c$$$ and $$$\omega_Q$$$.

The computationally efficient modular simulation framework opens the field for novel pulse sequences, improved signal suppression methods and unique phase cycles. Furthermore, quantitative parameter studies of pulse sequence and sample parameters can be performed without the need for lengthy measurements. This allows to obtain a deeper understanding of the influence of specific parameters on the signal.

Conclusion

To obtain a deeper understaning of physical parameters affecting the signal of arbitrary quadrupolar NMR pulse sequences, we present a flexible and modular simulation framework for quadrupolar NMR dynamics. Comparison between simulated and measured data showed excellent agreement using TQTPPI pulse sequence. Hence, the influence of sample and pulse sequence parameters on quadrupole NMR signals of arbitrary pulse sequences can be easily evaluated.

Acknowledgements

No acknowledgement found.

References

1. Schepkin VD, Neubauer A, Nagel AM, Budinger TF. Comparison of potassium and sodium binding in vivo and in agarose samples using TQTPPI pulse sequence. J Magn Reson. 2017;277:162-168.

2. Gilles A, Nagel AM, Madelin G. Multipulse sodium magnetic resonance imaging for multicompartment quantification: Proof-of-concept. Sci Rep. 2017;7(1):17435.

3. Hoesl MAU, Schad LR, Rapacchi S. Efficient 23Na triple-quantum signal imaging on clinical scanners: Cartesian imaging of single and triple-quantum 23Na (CRISTINA). Magn Reson Med. 2020;84(5):2412-2428.

4. Schepkin VD. Statistical tensor analysis of the MQ MR signals generated by weak quadrupole interactions. Zeitschrift für Medizinische Physik. 2019.

5. Jaccard G, Wimperis S, Bodenhausen G. Multiple-quantum NMR spectroscopy of S=3/2 spins in isotropic phase: A new probe for multiexponential relaxation. The Journal of Chemical Physics. 1986;85(11):6282-6293.

6. Tanase C, Boada FE. Algebraic description of spin 3/2 dynamics in NMR experiments. J Magn Reson. 2005;173(2):236-253.

7. van der Maarel JRC. Thermal relaxation and coherence dynamics of spin 3/2. I. Static and fluctuating quadrupolar interactions in the multipole basis. Concepts in Magnetic Resonance. 2003;19A(2):97-116.

8. van der Maarel JRC. Thermal relaxation and coherence dynamics of spin 3/2. II. Strong radio-frequency field. Concepts in Magnetic Resonance Part A. 2003;19A(2):117-133.

Figures

Fig.1: Differential equations for temporal evolution of a) zero-quantum, and b) single–quantum relaxation. The auto-relaxation terms are shown in black, while the $$$T_{1n}\rightarrow T_{3n}$$$ transition terms are shown in red. For macroscopic anisotropies, i.e. $$$\bar{\omega}_Q\neq0$$$, $$$T_{2n}$$$ tensor no longer decouple from the other tensors, as shown in blue. Longitudinal (zero quantum) relaxation does not form $$$T_{20}$$$ tensors by relaxation and therefore, the differential equations for isotropic and anisotropic environments do not differ.

Fig.3: a) TQTPPI pulse sequence with corresponding coherence pathways. The first 90° pulse transforms thermal equilibrium T10 to transversal magnetization T1±1, which then relaxes to T2±1 and T3±1. The 180° RF pulse refocuses phase coherence loss due to B0 inhomogeneity. The second 90° RF pulse creates T2±2 and T3±3 coherences, while the third 90° RF pulse results in the reverse transfer. Relaxation effects convert T2-1 and T3-1 to detectable T1-1 coherence. To select only the SQ and TQ signals, coherence path filters are necessary. b) Simulated TQTPPI FID using DQ and ZQ filters.

Fig.2: Visualization of allowed transitions under the effect of relaxation (red arrows) and hard RF pulses (blue arrows). The DQ branch (bottom) couples to the SQ (top) and TQ (center) branches only in an anisotropic environment. Relaxation effects only change the tensor rank, while hard RF pulses only affect the tensor order. This simple description demonstrates the power of the irreducible spherical tensor operator basis.

Fig.4: Comparison of a) simulated and b) measured TQTPPI spectra of a sample containing 4% w/w agar and 154mM NaCl. The TQTPPI spectra showed an excellent agreement between simulated and measured data (Tab.1). However, the neglection of possible B0 and B1 inhomogeneities in the simulation caused a larger TQ signal compared to measurement data.

Tab.1: Comparison of transversal relaxation times and TQ/SQ ratio for simulation and measurement data using agarose samples. The relaxation times showed excellent agreement between simulated and measured data, while the TQ/SQ ratio deviated less than 20%. This deviation is caused by B0 and B1 inhomogeneities, which are not accounted for in the simulation.

Proc. Intl. Soc. Mag. Reson. Med. 30 (2022)
4427
DOI: https://doi.org/10.58530/2022/4427