Juan Zou1, Cheng Li1, Ruoyou Wu1, Zhenzhen Xue1, Xin Liu1, Hairong Zheng1, and Shanshan Wang1
1Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, shenzhen city, China
Synopsis
Fast data acquisition
and high-quality image reconstruction are vital for dynamic MRI, which can capture both anatomical and temporal information. High-resolution
acquisition approaches in k-space and super-resolution approaches after reconstruction have been frequently reported. However, these methods may get
details lost at high acceleration factors. To address this issue, we propose a
multi-scale detail preserving reconstruction method for dynamic MR images. The
residuals of multi-scale intermediate images in the iterative procedure are
explored and the temporal and spatial dependencies between frames are
considered. Promising results are achieved by the proposed method at the high acceleration
factor of 11.
Introduction
Cardiac
cine MRI is important for clinical examination and
evaluation of cardiovascular diseases since it can present the shape, motor
function, and myocardial activity of the heart. However, the artifacts caused by
breathing and heartbeat are a challenge in cardiac MR imaging. Although the
commonly used under-sampling strategy speeds up the data acquisition, it also
causes artifacts in the image domain. Therefore, fast data acquisition and
high-quality image reconstruction are vital for dynamic MRI, which can capture
both anatomical and temporal information.
High-resolution
acquisition approaches in k-space and super-resolution approaches after
reconstruction in the image domain have been reported [1-3]. These methods either
have limited performance at certain high acceleration factors or suffer from the
error accumulation of a two-step structure. In order to preserve the important details, we propose a multi-scale detail
preserving reconstruction method for dynamic MR image reconstruction. Specifically,
the residuals of multi-scale intermediate images in the iterative procedure are
explored and the temporal and spatial dependencies between frames are considered.
We employ multi-scale super-resolution and bidirectional convLSTM as the sparse
regularization term in each reconstruction step to explore its prior knowledge.
This method can refine image details that are neglected by existing methods,
and achieve superior visual and quantified performance at high acceleration
factors, such as 11.Method
The proposed method targets high-quality image reconstruction at high
acceleration factors. The overall architecture
is shown in Figure 1. The details are described as follows. Eq. 1 summarizes the CS-MRI model for MR reconstruction, which is an
inverse problem. It can be solved as an unconstrained optimization problem (Eq.
2) and different types of prior knowledge can be exploited through the
regularization term $$$R(x)$$$. Two auxiliary variable $$$s$$$ and $$$z$$$ are introduced, where $$$z$$$ is constrained to be equal
to $$$x$$$ and $$$s$$$ is constrained to be
equal to $$$z$$$. Then, we can reconstruct $$$x$$$ by minimizing Eq. 3, and Eq. 3 can be solved via minimizing three
sub-problems shown in Eq. 4. Finally, the iterative procedures given in Eq. 5
are utilized to optimize the three sub-problems.
$$y=Ax+e\quad\quad\quad\quad\quad (1)$$
$$arg\min_xR(x)+ \frac{1}{2}‖Ax-y‖_2^2\quad\quad\quad\quad (2)$$
$$arg\min_x\frac{1}{2}‖Ax-y‖_2^2+R(s)+δ‖s-z‖_2^2+ε‖z-x‖_2^2\quad\quad\quad\quad (3)$$
\begin{cases}\displaystyle s_n=arg\min_sδ‖s-z_{n-1}‖_2^2+R(s)\quad\quad\quad\quad\quad\quad\quad\quad\quad\quad (4a)\\\displaystyle z_n=arg\min_zδ‖z-s_n‖_2^2+∇F(s_n)\quad\quad\quad\quad\quad\quad\quad\quad\quad\quad (4b) \\\displaystyle x_n=arg\min_s\frac{α}{2}‖Ax-y‖_2^2+ε‖x-z_n‖_2^2+r(x_n )\quad\quad\quad\quad (4c) \\\end{cases}
\begin{cases}s_n=Prox(z_{n-1})\quad\quad\quad\quad\quad\quad\quad\quad (5a)\\z_n=s_n-ωA^H (As_n-y)\quad\quad\quad\quad\quad (5b)\\x_n=z_n+∆x_n\quad\quad\quad\quad\quad\quad\quad\quad\quad (5c)\\\end{cases}
In Eq. 1, $$$x∈\mathbb{C}^N$$$ represents 2D cardiac high-quality sequences, $$$A∈\mathbb{C}^{M×N}$$$ is the under-sampling operator, $$$y∈\mathbb{C}^M (M≪N)$$$ is the under-sampled k-space data, and $$$e∈\mathbb{C}^M$$$ is the noise term. In Eq. 2, $$$R(x)$$$ represents the regularization of $$$x$$$, $$$\frac{1}{2}‖Ax-y‖_2^2$$$ is data fidelity term, and $$$δ$$$ and $$$ε$$$ are two penalty parameters. In
Eq. 3, $$$R(s)$$$ represents the regularization of $$$s$$$. In Eq. 4, we define $$$F(x)$$$ as the data fidelity term $$$\frac{1}{2}‖Ax-y‖_2^2$$$, and we can update $$$z_n$$$ from $$$s_n$$$ by minimizing $$$F(x)$$$. Since $$$z_n$$$ is a linear combination of $$$s_n$$$ and the original measurement $$$y$$$, we can transfer Eq. 4b to
minimize $$$‖z-s_n‖_2^2$$$ and the correction term $$$∇F(s_n)$$$. In order to update $$$x_n$$$ from $$$z_n$$$, we expect the
reconstruction values in iteration steps $$$n$$$ and $$$n-1$$$ to be equal by introducing a
correction term $$$r(x_n )$$$ between $$$x_n$$$ and $$$x_{n-1}$$$.
We unroll the
iterations into a deep neural network. The three procedures in Eq. 5 correspond
to three modules in the network as shown in Fig. 1. They are named as the reconstruction
layer $$$s_n$$$, the data consistency
layer $$$z_n$$$, and the details
preserving layer $$$x_n$$$. All parameters $$$(θ_1,ω,θ_2)$$$ in
Eq. 6-8 are learnable network
parameters.
\begin{cases}s_n=C_{θ_1}(z_{n-1})+z_{n-1}\quad\quad\quad\quad\quad (6)\\z_n=s_n-ωA^H(As_n-y)\quad\quad\quad\quad (7)\\x_n=z_n+C_{θ_2} (x_{n-1})\quad\quad\quad\quad\quad\quad (8)\\\end{cases}
where $$$C_{θ_1}$$$ represents the five 3D convolution layers in the reconstruction
module and $$$θ_1$$$ refers to the learnable parameters. $$$ω$$$ is the update step size in the data consistency modules. $$$x_n$$$ consists of two parts. One is a cascade of seven 2D convolution layers and the ReLU activation
function. The other is bidirectional convLSTM between $$$ x_n$$$ and $$$x_{n-1}$$$. $$$θ_2$$$ represents the learnable parameters in $$$C_{θ_2}$$$ .
Experimental configurations
T1-weighted FLASH
sequence is utilized to collect fully sampled cardiac data from 101 volunteers on
a 3T scanner. Each scan acquires a single slice from the
volunteer with 25 temporal frames. After data augmentation, our dataset
consists of 5634 complex-valued cardiac MR data. For each frame, we employ a
shear grid k-t Cartesian sampling pattern with an acceleration factor of 11 to undersample the
k-space data to generate the undersampled input image sequences. For reconstruction results, we compare our
approach with some existing cardiac reconstruction algorithms under the same acceleration
factor, including the CNN-based deep cascade reconstruction method (D5C5) [4] and the multi-supervised training model in k-space and image domain (DIMENSION) [5].Result
Table 1 lists the quantitative
results. Compared with existing methods, our method generates
better reconstruction results characterized by PSNR and SSIM.
Figure 2 shows some qualitative reconstruction results. From these qualitative
results, we observe that our method can reconstruct images with smaller errors and
are better at detail preservation and artifact removal when compared to the other
two recent methods. Conclusion
In this study, we propose a multi-scale detail-preserving
reconstruction method for dynamic MRI, which employs multi-scale
super-resolution and bidirectional convLSTM as the sparse regularization term
in each reconstruction step. Experimental results show that our method
achieves better reconstruction results both quantitatively and qualitatively
compared to two state-of-the-art image reconstruction methods.Acknowledgements
This research was partly supported
by Scientific and Technical Innovation 2030-"New Generation Artificial
Intelligence" Project
(2020AAA0104100, 2020AAA0104105), and the National Natural Science Foundation of
China (61871371, 81830056)References
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