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Real-time free-running cardiac imaging with ultra-fast reconstruction technique
Zhongsen Li1, Hanyu Wei1, Shuo Chen1, Chuyu Liu1, Mingzhu Fu1, Wei Qiu1, Shuai Wang1, Haining Wei1, Haozhong Sun1, Xihai Zhao1, and Rui Li1
1Center for Biomedical Imaging Research, Department of Biomedical Engineering, Tsinghua University, Beijing, China

Synopsis

In this study we have realized a real-time free-running cardiac imaging technique which can provide a continuous high-temporal-resolution movie of the heart during the whole acquisition process. This technique is based on the constrained partial separable model, which has been elaborately designed and optimized to achieve maximum reconstruction speed. Over two thousands dynamic frames of the heart can be acquired and reconstructed in just only 1 minute, without any ECG or respiratory monitoring devices needed. This technique has great potential for the cardiac imaging for patients with arrhythmia.

Introduction

Traditional cardiac CINE MR imaging provides an averaged heart beat movie by segmenting the acquisition, and is sensitive to patient arrhythmia and incomplete breath-control. Real-time dynamic imaging techniques based on low rank matrix decomposition can provide continuous cardiac images under free-running conditions[1]. However, these techniques suffer from long reconstruction time (usually >10min)[2,3]. Deep-learning based techniques lack ground-truth images for training in this scene, and the need for GPU resources also limits their application in clinical practice. In this work, we proposed an improved real-time cardiac imaging technique, which keeps the merits of high temporal resolution (~10ms), free-running without ECG or breath-control, continuous frames without averaging, and achieves an ultra-fast reconstruction speed. The whole process of acquisition and reconstruction can be finished in only 1 minute.

Methods

Imaging Model
We use the regularized partial separable model[3] as the basic imaging model:
$$ \min_U{\frac{1}{2}\left \| M\odot FS(VU) -y \right \|_2^2 +R(U) } $$
where the symbols represent: spatial subspace U, temporal subspace V, coil sensitivity maps S, Fourier transform F, under-sampling mask M, and acquired k-space data y. $$$\odot$$$ denotes element-wise multiplication.

Intuition
In previous work, the regularization term $$$ R(\cdot ) $$$ usually forces some kind of sparsity (transform T) in dynamic image domain:
$$ R(U)=\left \| T(VU) \right \| _1 $$
Optimization of this term usually requires iterative soft-thresholding of thousands of time frames, which is computational expensive. Thus, we seek to find a constraint which directly penalize in some domain which has the same size of U, while also provides a good regularization effect.

Regularization Term
We test 3 constraints in this work: isotropic total variation (isoTV)[4], local low rank (LLR)[5], and the Frobenius norm of temporal difference (tempF):
$$ isoTV(U)=\sum_{i,j} \sqrt{\left | (D_{x}\cdot U)_{i,j} \right |^2 + \left | (D_{y}\cdot U)_{i,j} \right |^2} $$
$$ LLR(U)= \sum_{i} \left \| T_{LLR}(U)_{i} \right \|_{*} $$
$$ tempF(U)=\frac{1}{2} \left \| \Phi \cdot VU \right \|_{F}^2 $$
where $$$D_{x}$$$ and $$$D_{y}$$$ denotes first order difference operator[4], $$$T_{LLR}$$$ denotes the patch extraction operator[5], $$$\Phi$$$ denotes temporal first order difference matrix.

Data Consistency Term
The optimization of data consistency term relies on the gradient:
$$ \frac{\partial }{\partial U} \left ( \frac{1}{2}\left \| M\odot FS(VU) -y \right \|_2^2 \right )= V^HS^HF^HM\odot FS VU-V^HS^HF^Hy $$
It can be proved that the operator position between V and S, V and F can be exchanged[6], giving:
$$ S^HF^H(V^HM\odot V)FSU-V^HS^HF^Hy $$
It can be further proved that the operator $$$V^HM\odot V$$$ can be substituted by a matrix kernel[7], which totally remove time dimension in the expression.

The overall pipeline from data acquisition to image reconstruction is shown in Figure 1.

Retrospective Experiment
We use the online OCMR cardiac CINE k-space dataset[8] for retrospective undersampling and simulate the real-time scan and reconstruction. A total of 49 slices of short axis CINE images is selected from 17 subjects.

Prospective Experiment
Realtime free-running cardiac imaging sequence was implemented on a 3T clinical scanner (Philips IngeniaCX R5.7.1; Best, Netherlands). To optimize the technique, three different img:nav ratios and four different phasing encoding view order settings are tested.
The final optimized realtime free-running cardiac imaging technique is compared to clinical CINE sequence on the scanner under quite similar scan parameters:FOV = 300mm x 300mm, voxel size = 2mm x 2mm, matrix size = 152 x 150, slice thickness = 8mm, flip angle = 45 degree, TR$$$\approx $$$3ms, TE$$$\approx $$$1.5ms
The cardiac phases of CINE imaging is 22, equivalent to temporal resolution of 45 ms, which requires a total acquisition time of 11s.The acquisition time of realtime cardiac imaging is 30s, which produces 2250 time frames.

Experiments and Results

Retrospective Experiment
The result is shown in Figure 2. In addition to the three constrained reconstruction algorithms listed above, zero-filling and least-square reconstruction are also implemented for comparison. The quantitative comparison is given in Figure 3. It is demonstrated that tempF produce the best performance and is used for the following prospective experiments.

Prospective Experiment
The comparative result is given in Figure 4. As a conclusion, random view order is demonstrated to produce the best image quality. And img:nav = 3:1 is prefered because total acquisition time is reduced due to less nav acquisition.
As shown in Figure 5, the proposed technique produces comparable image quality with clinical standard CINE images, and achieves 12ms temporal resolution, free-running without ECG or breath-control, and displays a continuous movie of the heart during the whole acquisition period. Most significantly, the acquisition and reconstruction can be finished within just 1 minute.

Discussion and Conclusion

The main contribution of this work is successfully reducing the reconstruction time of realtime cardiac imaging to a clinically acceptable level. We noticed that a significant dimensionality reduction is achieved by modeling dynamic images as low-rank (such as partial separable model). This should not only help with recovering signal from undersampled observations, but also help to reduce the computational cost. By elaborately designing regularization term and optimizing the implementation, the whole iterative process can be performed in the low-dimensional domain, which is the key of reducing reconstruction time.
Combining the merits of realtime free-running imaging with fast acquisition and reconstruction efficiency, this technique has great potential for the cardiac imaging for patients with arrhythmia.

Acknowledgements

Special thanks to Dr. Zhensen Chen for his help with sequence development coding.

References

[1]. Brinegar, C., et al. (2008). Real-time cardiac MRI without triggering, gating, or breath holding. 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, IEEE.

[2]. Zhao, B., et al. (2010). Low rank matrix recovery for real-time cardiac MRI. 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, IEEE.

[3]. Zhao, B., et al. (2012). "Image reconstruction from highly undersampled (k, t)-space data with joint partial separability and sparsity constraints." IEEE transactions on medical imaging 31(9): 1809-1820.

[4]. Montesinos, P., et al. (2014). "Application of the compressed sensing technique to self‐gated cardiac cine sequences in small animals." Magnetic resonance in medicine 72(2): 369-380.

[5]. Tamir, J. I., et al. (2017). "T2 shuffling: sharp, multicontrast, volumetric fast spin‐echo imaging." Magnetic resonance in medicine 77(1): 180-195.

[6]. Asslander, J., et al. (2018). "Low rank alternating direction method of multipliers reconstruction for MR fingerprinting." Magn Reson Med 79(1): 83-96.

[7]. Tamir, J. I. (2018). MR Shuffling: Accelerated Single-Scan Multi-Contrast Magnetic Resonance Imaging. University of California, Berkeley.

[8]. Chen, C., Liu, Y., Schniter, P., Tong, M., Zareba, K., Simonetti, O., ... & Ahmad, R. (2020). OCMR (v1. 0)--Open-Access Dataset for Multi-Coil k-Space Data for Cardiovascular Magnetic Resonance Imaging. arXiv preprint arXiv:2008.03410.


Figures

Figure 1. An overall pipeline of the proposed realtime free-running cardiac imaging technique. The scanning can be performed freely without any additional ECG or respiratory monitoring equippments. The sequence sampled k-space in an "alternating" fasion, which acquires "img data" and "nav data" for calculating spatial and temporal subspace. The main improment lies in the elaborate design and optimization of the iteration process of regularization term and data fidelity term, which facilitates fast reconstruction speed while preserves the effectiveness of low-rank model.

Figure 2. Retrospectively undersampling reconstruction experiment on OCMR cardiac MR dataset. Four cases are shown here. For each case, the first row shows a single reconstructed frame, the second row shows the error map, the third row shows the zoomed region of heart, the last row shows one-dimensional temporal variation along the dotted line across the ventricle. The result demonstrates that reconstruction with tempF constraint gives the best image quality, which produces the least error while avoids signal oscillation along time dimension.

Figure 3. The quantitative statistics of different constrained reconstruction algorithm. The result confirms that tempF is a powerful regularization term, which achieves the best score on all 3 image quality metrics: nRMSE, PSNR and SSIM. Besides, the computational efficiency of tempF is extremely high, which only brings a little extra time cost compared with zero-filling reconstruction.

Figure 4. Optimization of imaging parameters. Here we test 4 view orders (a) and 3 img:nav ratios, corresponding to 3 different temporal resolution (b). The result shows that random order produce the best reconstruction quality, while both 2 types of sequential view order leads to blurring noise and symmetric random order displays some artifacts (c). The result in (d) shows the img:nav ratio does not obviously affect image quality. It is worth noting that from the temporal variarion curve we can observe respiratory motion, which occurs approximately every 4 heart beats.

Figure 5. Comparison between the proposed realtime free-running cardiac imaging technique with clinical used CINE imaging provided by the scanner. The two sequences are performed successively in the same scan and under quite similar imaging paramters. The results of 3 subjects are shown, which display comparable image quality. Althougth a little smoothing effect can be perceived, the proposed technique achieves high temporal resolution, realtime, and free-running cardiac imaging and reconstruction within just 1 minute.

Proc. Intl. Soc. Mag. Reson. Med. 30 (2022)
4125
DOI: https://doi.org/10.58530/2022/4125