Rong Guo1,2, Yudu Li1,2, Yibo Zhao1,2, Tianyao Wang3, Yao Li4, Brad Sutton1,2,5, and Zhi-Pei Liang1,2
1Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, United States, 2Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, United States, 3Radiology Department, Fifth People's Hospital of Shanghai, Fudan University, Shanghai, China, 4School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China, 5Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, United States
Synopsis
The feasibility of high-resolution
metabolic imaging using water-unsuppressed MRSI has been recently demonstrated
in clinical settings using SPICE. This work utilizes the unsuppressed water
spectroscopic signals for distortion-free mapping of water diffusion
coefficients, thus adding a new feature to SPICE for multi-modal brain mapping.
Experimental results demonstrated that simultaneous distortion-free diffusion
imaging at 1.0×1.0×2.0 mm3 resolution and metabolic imaging at
2.0×3.0×3.0 mm3 nominal resolution were successfully obtained in a
total 8-min scan.
Introduction
Diffusion imaging and metabolic
imaging provide complementary information of the brain. There is an increasing
interest in including both imaging modalities in clinical applications such as stroke
and cancer imaging to improve diagnostic specificity and accuracy1-3. In current practice, diffusion MRI and MRSI data are acquired using separate
sequences such as single-shot spin-echo EPI and CSI, respectively4,5. However, single-shot EPI suffers from geometric distortion and limited
resolution, and CSI is limited by low resolution and long scan time (more than
20 minutes). Current separate acquisition is not only time consuming, but also
challenging for registration given the distortion of diffusion MRI and low SNR,
low resolution of MRSI data.
In this work, we present
a new method to achieve simultaneous diffusion and metabolic imaging built on
our recent progress in water-unsuppressed MRSI using SPICE6-10. The
SPICE sequence was extended with diffusion-preparation pulses for mapping of
diffusion coefficients; and the (k, t)-space was highly sparsely sampled.
Furthermore, the unsuppressed water signals of SPICE were incorporated into a generalized
series (GS) model for reconstruction and
correction of the data corrupted by physiological motion. As a result, distortion-free
diffusion images, ADC maps at 1.0×1.0×2.0 mm3 and metabolite maps at
2.0×3.0×3.0 mm3 resolution were simultaneously obtained in an
8-minute scan. Methods
Data Acquisition: As illustrated in Fig. 1(a), the proposed
acquisition sequence kept the basic features of the SPICE sequence for
water-unsuppressed MRSI while extending with a diffusion preparation module for
mapping of water diffusion. The diffusion preparation pulses included three
pairs of hard pulses to reduce sensitivity to B0 and B1
inhomogeneity. At the end of each TR, linear navigators in orthogonal
directions were embedded to detect whether the data were corrupted by physiological
motion.
Figure 1(b) shows the sampling pattern
of (k, t)-space: first, metabolite signals and high-resolution water signals were
acquired using SPICE sequence 10; then diffusion frames with
different b values and directions followed; (k, t)-spaces of the diffusion
frames were sparsely sampled using CAIPIRINHA trajectories (the spatiotemporal
undersampling factor was 388, while the effective spatial undersampling factor
is only 2.7 if the temporal encodings were regarded as for spatial encodings) 11, resulting in a 10-second scan time for each diffusion frame.
The acquisition
parameters of the current implementation were: FOV: 240×240×72 mm3,
TR/TE: 160/1.6 ms, matrix size = 110×216×72, b-value = 0, 500 or 1000 s/mm2
in three orthogonal directions, scan time: 7:20 min for SPICE frame, 0:40 min
for diffusion frames, thus 8 min in total.
Data Processing: Given
the acquisition sequence, the differences between the signals in the SPICE
frame and the diffusion frames were only diffusion weighting which does not
affect FID decay process. Therefore, the relationship between the spatiotemporal
functions of the SPICE frame (denoted as $$$\rho_r(x,t)$$$) and diffusion frames (denoted as $$$\rho_i(x,t)$$$) could be expressed using a low order GS
model 12:
$$\rho_i(\mathbf{x},t)=\rho_r(\mathbf{x},t)\cdot \sum_{n_i=-N_i/2}^{N_i/2}{c_{n_i}(\mathbf{x})e^{i2{\pi}n_i{\Delta}ft}}$$
where $$$i$$$ denotes a specific diffusion frame, $$$c_{n_i}(x)$$$ the
GS coefficients and $$$N_i$$$ the
model order. Reconstruction of $$$\rho_i(x,t)$$$ from the sparse data (denoted as $$$d_i$$$) can be done by solving the following
optimization problem:
$$\widehat{c}_i={\mathrm{arg}}{\mathrm{min}}_{c_i}\left \| d_i-{\Omega}FBS(G(\rho_r)c_i))) \right \|_2^2 + R(c_i)$$
where $$$c_i$$$ and
$$$\rho_r$$$ are
the vector forms of {$$$c_{n_i}(x)$$$} and
$$$\rho_r(x,t)$$$, $$$\Omega,F,B,S,G,R$$$ operators representing k-space sampling,
Fourier transform, field inhomogeneity, coil sensitivity, GS modeling and
regularization, respectively. With $$$\widehat{c}_i$$$ being
determined, reconstructed diffusion signals $$$\widehat{\rho}_i(x,t)$$$ could
be synthesized using the GS model and the SPICE signals.
To correct the errors caused by the
physiological motion, first, we identified the corrupted TRs and corresponding
data using the navigator signals. Then, the corrupted (k, t)-space data were
discarded and interpolated using the uncorrupted data through GS-based
reconstruction with stronger constraints. The final reconstruction results were
generated from the corrected data.
The generation of
metabolite maps from the SPICE frame followed the existing methods5-10.Results
To demonstrate the feasibility and
potential of the proposed method, phantom scans were carried out using the NIST/ISMRM
diffusion phantom; in vivo experiments were performed on both healthy subjects
and tumor patients. Figure 2 shows the water diffusion results obtained from the
NIST/ISMRM phantom. Compared with the conventional EPI method, the proposed
method showed consistent quantitative ADC values with less geometric
distortion. The reconstruction from sparse data (as proposed) also showed good
consistency with those from a fully sampled data. Figure 3 shows diffusion
images of different b-values, images of different TEs, and ADC maps obtained
from a healthy subject. The ADC map also showed consistency with the EPI method
but obviously less geometric distortion. Figure 4 shows a complete set of
results from the 8-minute scan, including the TRACE image, ADC map and metabolite
maps including NAA, Cr and Cho. Another set of results acquired from a tumor patient
are shown in Fig. 5. Hyperintensity in the diffusion images, increase of ADC
values, and decrease of NAA were observed in the lesion and edema, which were
consistent with the literature observations13.Conclusion
This work presents a new method for
simultaneous diffusion imaging and metabolic imaging of the brain. Combining
diffusion preparation with water-unsuppressed MRSI acquisition, distortion-free
diffusion imaging at 1.0×1.0×2.0 mm3 resolution and metabolic
imaging at 2.0×3.0×3.0 mm3 nominal resolution were successfully
obtained in an 8-min scan. Acknowledgements
No acknowledgement found.References
1. Carhuapoma JR, Wang PY, Beauchamp
NJ, et al. Diffusion-weighted MRI and proton MR spectroscopic imaging in the
study of secondary neuronal injury after intracerebral hemorrhage. Stroke. 2000;31(3):726-732.
2. Parsons MW, Li T, Barber PA, et
al. Combined 1H MR spectroscopy and diffusion-weighted MRI improves the
prediction of stroke outcome. Neurology. 2000;55(4):498-505.
3. Rahimifar P, Hashemi H, Malek M,
et al. Diagnostic value of 3 T MR spectroscopy, diffusion-weighted MRI, and
apparent diffusion coefficient value for distinguishing benign from malignant
myometrial tumours. Clin Radiol. 2019;74(7):571.e9-571.e18.
4. Stehling MK, Turner R, Mansfield
P. Echo-planar imaging: Magnetic resonance imaging in a fraction of a second.
Science. 1991;254(5028):43-50.
5. Brown TR, Kincaid BM, Ugurbil K.
NMR chemical shift imaging in three dimensions. Proc Natl Acad Sci U S A.
1982;79(11):3523-3526.
6. Lam F, Liang ZP. A subspace
approach to high-resolution spectroscopic imaging. Magn Reson Med.
2014;71(4):1349-1357.
7. Lam F, Ma C, Clifford B, Johnson
CL, Liang ZP. High-resolution 1H-MRSI of the brain using SPICE: Data
acquisition and image reconstruction. Magn Reson Med. 2016;76(4):1059-1070.
8. Peng X, Lam F, Li Y, Clifford B,
Liang ZP. Simultaneous QSM and metabolic imaging of the brain using SPICE. Magn
Reson Med. 2018;79(1):13-21.
9. Guo R, Zhao Y, Li Y, Li Y, Liang
ZP. Simultaneous metabolic and functional imaging of the brain using SPICE.
Magn Reson Med. 2019;82(6):1993-2002.
10. Guo R, Zhao Y, Li Y, et al.
Simultaneous QSM and metabolic imaging of the brain using SPICE: Further
improvements in data acquisition and processing. Magn Reson Med.
2021;85(2):970-977.
11. Breuer FA, Blaimer M, Mueller MF,
et al. Controlled aliasing in volumetric parallel imaging (2D CAIPIRINHA). Magn
Reson Med. 2006;55(3):549-556.
12. Liang ZP, Lauterbur PC. A
Generalized Series Approach to MR Spectroscopic Imaging. IEEE Trans Med
Imaging. 1991;10(2):132-137.
13. Maier SE, Sun Y, Mulkern R V.
Diffusion imaging of brain tumors. NMR Biomed. 2010;23(7).