Minjie Zhu1, Aditya Jhajharia1, Joshua Rogers1, and Mayer Dirk1
1University of Maryland, Baltimore, Baltimore, MD, United States
Synopsis
The
goal of this study is to validate the Low Rank Plus Sparse Reconstruction
algorithm in in-vivo spectroscopic imaging applications. The
proposed method can be used to increase temporal and/or spatial resolution of dynamic hyperpolarized 13C
imaging
without compromising image quality.
Introduction
Under-sampled dynamic MRI data can be successfully
reconstructed via the recently developed low rank (L) plus sparse (S) matrix
decomposition model (L+S) without significant loss of information [1,2], thus
providing the possibility to increase temporal resolution of dynamic imaging. To
use the method for spectroscopic imaging, we can either iterate the L+S
algorithm for the spatiotemporal matrix at each frequency point independently [3]
or directly iterate on the spectro-spatio-temporal matrix via the 3D NuFFT
operator [4]. For the later method, previous work has shown its successful application
with retrospectively undersampled data. In this work, we present its application in truly
accelerated hyperpolarized C13 imaging with a pseudo-randomly undersampled
spiral chemical shift imaging data acquisition scheme.Methods
Hyperpolarized C13 spiral chemical shift imaging (spCSI) was performed
on a healthy mouse using clinical 3T GE MR scanner (GE Healthcare, Waukesha,
WI, USA) with a 1H-13C dual-tuned RF coil.
The animal received a 1µmol/g dose of 125mM hyperpolarized pyruvate
(approximately 0.23 mL) injected over 6 seconds through a tail vein catheter.
Scan parameters for the 2D dynamic spCSI sequence was: 60 × 60 mm FOV, 2 × 2 mm2
nominal in-plane resolution, 10mm slice thickness in coronal orientation centered
at the two kidneys. The fully sampled spiral k-space trajectory was comprised
of 24 interleaves, with 24 echoes and a spectral width of 280Hz. The spCSI
sequence was carried out in such a way: one fully sampled block of 24
interleaves were carried out for every 3 second interval. The entire scan has
10 fully sampled blocks, or equivalently 24x10=240 excitations for a total scan
time of 30 seconds. The order of the interleaves was randomly permuted for each
block. Thus, dynamic images with 10 time points, 3 second temporal resolution can
be reconstructed using the fully sampled blocks, whereas dynamic images with 20
time points, 1.5 second temporal resolution can be reconstructed using every 12 interleaves (50%
under-sampled). Fig.1 illustrates the generation of dynamic images at two
temporal resolutions using the same data acquired. A variable flip angle scheme was used for the entire scan. The scan started 3
seconds after the beginning of injection.
The prospectively under-sampled dataset was reconstructed via the L+S algorithm similar to previous retrospective study [4].
Metabolic images of pyruvate, lactate, and alanine were calculated by phasing
the spectrum in each voxel and integrating the resulting peak from the
spectro-spatial-temporal matrix after the L+S iterations. λL , λS and the tolerance limit for the L+S
reconstruction were 0.01, 0.001 and 0.02 respectively, selected to optimize the
image quality with least distortion to dynamic evolvements of each metabolite.Results and Discussion
Reconstruction results at two temporal resolutions are shown in Fig.2. Mean
intensity in the vasculature and right kidney region are calculated for pyruvate,
lactate and alanine respectively, plotted in Fig.3. The L+S algorithm
successfully reconstructed the 50% under-sampled dataset, with no significant
artifacts seen for all three metabolites. Comparing the dynamic curves for the
respective regions proves that the L+S reconstruction can recover the dynamics
at a higher temporal resolution (acceleration factor of 2 in
this experiment). The rise of lactate and alanine intensity towards the end of
the scan can be contributed to the utilization of variable flip angle with
accumulation of product metabolites along the time course. Slight deviation in
the dynamic curve can be observed for lactate and alanine, since the pyruvate
is the dominant metabolite in terms of signal intensity, and the L+S algorithm
is enforcing low rank property in between the time points when operating on the
entire spectro-spatio-temporal matrix. Further finetuning of the iteration
parameters can possibly get a better estimation of the true dynamics.Conclusion
An acceleration factor of 2 in temporal resolution is
achieved for in vivo Hyperpolarized 13C Spiral Chemical Shift Imaging using Low Rank Plus Sparse
Reconstruction algorithm.Acknowledgements
This
work was supported by NIH grants R21 NS096575, R01 DK106395, R21 CA213020, and
R21 CA202694.References
[1] Otazo, et al. "Low‐rank plus sparse matrix
decomposition for accelerated dynamic MRI with separation of background and
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[2] Milshteyn, et al. "Using a local low rank plus sparse
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[3] DeVience, et al. "Speeding up dynamic spiral
chemical shift imaging with incoherent sampling and low‐rank matrix
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[4] Zhu, et al. "Accelerating
Hyperpolarized 13C Spiral Chemical Shift Imaging with Joint Spectral-Spatial
Low Rank Plus Sparse Reconstruction." Proc. Intl. Soc. Mag. Reson. Med. 29 (2021).