Yun Liu1, Chenglong Wang1, Funing Chu2, Jinrong Qu2, Xu Yan3, and Guang Yang1
1Shanghai Key Laboratory of Magnetic Resonance, East China Normal University, Shanghai, China, 2Department of Radiology, The Affiliated Cancer Hospital of Zhengzhou University &Henan Cancer Hospital, Zhengzhou, China, 3MR Scientific Marketing, Siemens Healthineers, Shanghai, China
Synopsis
A total number of 439 patients with esophageal
squamous cell carcinoma (ESCC) were enrolled in this study. All patients scanned
using StarVIBE sequences. We split the data randomly into training and independent
test cohort in a ratio of 7 to 3. We proposed a method for feature selection to
find the most useful features for survival analysis. The radiomics score
combined with clinical variables achieved the highest consistency in the prediction of
disease-free survival (DFS) with a C-index value of 0.682 in the test cohort
and overall survival (OS) with a C-index value of 0.691 in the test cohort.
Introduction
Esophageal cancer (EC) ranks the seventh and the sixth in incidence and mortality worldwide among malignant tumors1. EC is also common in China, ranking the third and the fourth in incidence and mortality,
respectively. More than 90 percent of EC are squamous cell carcinoma (ESCC)2 . Due to the
limitation of conventional MRI imaging, most previous studies on EC used CT
images. To explore the clinical value of MRI images in EC, we used StarVIBE
sequence which minimizes motion artifacts and has a high spatial resolution. To
the best of our knowledge, this is the first work using MRI image for survival
analysis of EC. Survival analysis can not only provide information for
personalized treatment plan for clinicians, but also allow for better follow-up
plans to monitor recurrence. Our goal of this study is to find whether the
combination of radiomics features can outperform the clinical signatures based
on the high contrast enhanced sequence of MRI.Methods
All patients were imaged on a 3T MR (MAGNETOM Skyra,
Siemens Healthcare) scanner.
The imaging parameters were as follows: TR/TE = 3.98 ms/1.91 ms; FOV = 300 mm ×
300 mm × 72 mm; resolution = 1.0 mm × 1.0mm × 1.0 mm; flip angle = 12 degrees;
radial views = 1659; acquisition time = 309 s. The inclusion criteria were: 1) Patients
underwent preoperative contrast-enhanced MRI performed on a 3T scanner. 2)
Patients with biopsy-confirmed EC. 3) Clinical characteristics available. All regions
of interest (ROI) were delineated by
three radiologists with more than five years of chest reading experience.
The workflow of the radiomics study is shown in Figure 1. We split the whole dataset randomly into a training cohort (n=307) and a test cohort (n=132), ensuring there was no significant
difference between the distribution of clinical features, and MRI-based T-staging
in the training and test cohort.
Firstly, we extracted radiomics features
from the ROIs with PyRadiomics3 .
We extracted three classes of features from original image, including shape
(14), first order (18) and textures features (75). Textures features included those
based on gray-level
co-occurrence matrix (GLCM, 24), gray-level size zone matrix (GLSZM, 16), gray-level
run length matrix (GLRLM, 16), neighboring gray tone difference matrix (NGTDM,
5), and gray-level dependence matrix (GLDM, 14). First order and texture
features were also extracted from wavelet-transformed images. Secondly, features were normalized
by Z-score normalization4.
Then univariate COX-regression was applied in training cohort to remove some
redundant features5. Next, we
divided the remaining features into 13 groups by the feature type. In
each group, we selected the features that are most relevant to the target
variable (i.e. survival time) by
Pearson-correlation coefficient (PCC)6
and multivariate Cox-regression7
was performed on the selected features. If the C-index was larger than 0.6 in
validation cohort, the features of that category would be kept for further
model building. Finally, all retained features were combined and multivariate
Cox-regression with LASSO constraints was used to build the radiomics model and
obtain the final radiomics score.
Besides
the above radiomics model, we also used multivariate Cox-regression to build a clinical
model with four clinical variables (age, sex, number of lymph nodes > 5mm in short diameter, short diameter
(mm) of the largest lymph node), a clinical-radiological model with clinical variables
and MRI-based T-staging, and a combined model with clinical variables and
radiomics score.Results
For
DFS prediction, the radiomics
model, the clinical model, and the clinical-radiological model achieved a
C-index of 0.634, 0.654, and 0.666 in the test cohort, respectively. The combined
model achieved the best result with a C-index of 0.691 in test cohort. Detailed
results are listed in Figure 2.
For OS prediction, the best C-index value of 0.682
of combined model was maintained in test cohort, which was higher than the clinical
model (0.677), the radiomics model (0.631) and the clinical-radiological model (0.668).
Detailed results are showed in Figure 3.
To further evaluate the
performance of our model, we also calculated the corresponding AUC values for
the 1-year, 2-year and 3-year survival rate. For one-year survival rate, the
radiomics model, clinical model, clinical-radiological model, and the combined
model achieved AUC values of 0.695, 0.713, 0.702 and 0.734, respectively, in
the test cohort. Detailed comparison results are shown in Figure 4. Overall, the combined model outperformed other
models.Discussion and Conclusion
In
this work, we proposed a predictive model combining clinical variables and the radiomics
to predict survival time for patients with ESCC, which outperformed the clinical
and clinical radiological models. While the radiomics score demonstrated better
prognostic efficacy for EC than MRI-based
T-staging, by eliminating the need for manual T-staging, our method can also reduce
the workload of the clinicians and eliminate the negative influence of the
inter-reader variations to the diagnosis.
In
the future, larger dataset from multi-institution can be used to further verify
our model, and to group patients by treatment plans for obtain prognostic
assessments for plans. Deep learning is also a promising alternative to extract
more valuable information from MRI images for more precise predictions.Acknowledgements
Part of this work is sponsored by Shanghai Pujiang Program (Grant No. 2020PJD016) and China Postdoctoral Science Foundation (Grant No. 2021M691038)References
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