Victoria Y Yu1, Ouri Cohen1, Can Wu1, Ergys Subashi1, Manuel Baumann2, Peter Koken2, Mariya Doneva2, Michael Zelefsky3, Laura Cervino1, and Ricardo Otazo1
1Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, United States, 2Philips Research, Hamburg, Germany, 3Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, United States
Synopsis
The application of MR fingerprinting in the prostate
is challenging due to the presence of image distortions produced by B0
inhomogeneities. This works presents the combination of radial sampling to minimize the
effects of B0 inhomogeneity and temporal subspace reconstruction to accelerate
the acquisition for fast distortionless T1 and T2 mapping in the prostate in
less than 4 minutes.
Introduction
MR fingerprinting (MRF) enables robust simultaneous quantitative multiparametric mapping in a single acquisition (1,2). The feasibility of combining T1 and T2 maps with apparent diffusion coefficient (ADC) maps for improving diagnosis of prostate cancer has been demonstrated (3,4). However, image quality of the T1 and T2 maps was suboptimal, which was due to geometric distortions in the prostate regions resulting from the long spiral acquisition readout. This work proposes to use radial sampling to minimize the effects of B0 inhomogeneity and temporal subspace reconstruction to accelerate the acquisition for fast distortionless T1 and T2 mapping in the prostate in less than 4 minutes. The proposed subspace radial MRF was tested on a volunteer & a patient with prostate cancer.Methods
Radial MRF data acquisition
A multi-slice gradient-spoiled steady-state-free-precession
(SSFP) MRF sequence with inversion preparation was used with golden angle
radial trajectory readout (5) on a 3T Philips Elition (Philips, Best, The
Netherlands). MRF acquisition parameters are as follows: FOV = 250 x 250 mm2,
image matrix = 224 x 224, slice thickness = 5 mm, number of slices = 15, echo
time (TE) = 4 ms, repetition time (TR) = 10 ms, variable flip angle range =
0-60 degrees. The utilized acquisition schedule contains 500 time points.
One prostate patient and one healthy volunteer subject were recruited and gave informed consent in accordance with
institutional IRB. Acquisitions with 3 and 5 radial spokes per time point
were performed to cover the entire prostate, with scan times of 3:47min and
6:18min, respectively. The prostate, peripheral
and transitional zones and visible dominant lesion (patient) were delineated
for each study, and the statistics and distribution of the quantitative mapping
values were analyzed.
Subspace MRF reconstruction:
Since the entries of the MRF dictionary present extensive
correlations, a temporal subspace can be estimated to constrain the
reconstruction of the time-series of undersampled frames (Figure 1). Given the
subspace defined by Φ, the
high-dimensional time-series m (500 dynamics) can be projected into the
subspace s= Φm. Since s will
have a lower dimensionality, it will require fewer k-space samples per time
point. In this work, the subspace was defined using the first 5 right singular
vectors of the MRF dictionary, which represents a 100-fold dimensionality
reduction. Subspace MRF reconstruction is performed by solving the following
optimization problem:
$$ \mathop\arg\min_{s}\frac{1}{2}\parallel E\phi s-d\parallel _2^2 +
\lambda \parallel Ts \parallel_{1} $$
where E represents the mapping from k-space (kx, ky,
t, ch) to (x,y,t), = k-time raw data, m
= space-time data, and T is transform
to promote sparsity in s. The reconstruction was implemented in Matlab using a
non-linear conjugate gradient algorithm.
To evaluate the image quality improvements resulting
from subspace MRF reconstruction, standard nonuniform Fourier transform (NUFFT)
reconstruction, and a golden-angle radial sparse parallel (GRASP)
reconstruction method (6) were also performed, and resultant T1 and T2 parameter maps
were compared. T1, and T2 relaxation parameter maps were calculated by dot
product matching to the simulated MRF dictionary.
Results
Figure 2 shows the resulting
quantitative T1 and T2 maps from 3 and 5 spoke/dynamic acquisitions
with NUFFT, GRASP, and the proposed subspace reconstructions. The lesion is
indicated with white arrows on the clinical apparent diffusion coefficient map. The proposed subspace
reconstruction on the 3 spoke/dynamic acquisition, indicated within red
boxes, resulted in image quality significantly superior to that of 5
spoke/dynamic acquisition with standard NUFFT reconstruction, indicated by green
dashed boxes. Subtle but visible difference in T1 and T2 values in the tumor
region can be visualized in the subspace MRF parameter maps. This result
indicates that significant reduction in acquisition time while still
maintaining image quality with the proposed method is feasible. Figure 3
demonstrates trends of the delineated tumor region, peripheral zone, and
transitional zone with different reconstruction methods. For all evaluated
regions and both T1 and T2 parameter maps, noticeable decrease in spread of the
T1 and T2 values can be observed, with the proposed subspace MRF having the
least spread in values. Figure 4 demonstrates the parameter maps in a healthy
volunteer for all acquisitions & reconstruction methods, as well as delineated
regions for analysis. Excellent image quality was achieved with subspace MRF
reconstruction, and 3 spoke/dynamic acquisition appears to be qualitatively
comparable with the 5 spoke/dynamic subspace MRF image maps. Table 1 shows
the mean & standard deviation values of all evaluated regions-of-interest in
the healthy volunteer dataset. The reduction in standard deviation with the
proposed method without bias to mean T1 and T2 value is also demonstrated. The T1 and T2 values are in agreement with
values reported in literature (3,4). With subspace MRF, results from both long & short acquisitions are nearly identical, indicating that 3 spoke/dynamic acquisition could be the superior option under ideal acquisition
conditions.Discussion/Conclusion
This work demonstrated the
feasibility of fast distortionless T1 and T2 mapping using golden-angle radial
MR fingerprinting and a novel subspace dynamic reconstruction technique. This
approach not only significantly improves image quality compared with standard
reconstruction methods, but also enables substantial shortening of scan time
without sacrificing image quality and quantitative mapping accuracy. In future
work, quantitative mapping repeatability as well as patient-specific image
quality variations will be further examined. Acknowledgements
This research work was performed in collaboration and under
an institutional master research agreement with Philips Healthcare. This work
was partially supported by the NIH/NCI Cancer Center Support Grant/Core Grant
(P30 CA008748). The authors would like to thank the MRI technologists and
therapists in the MSKCC Department of Radiation Oncology for their skilled
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