Brendan L. Eck1, Jeehun Kim2, Mingrui Yang2, Dan Ma3, Mark A. Griswold3,4, and Xiaojuan Li2,3
1Imaging Institute, Cleveland Clinic, Cleveland, OH, United States, 2Biomedical Engineering, Cleveland Clinic, Cleveland, OH, United States, 3Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, United States, 4Department of Radiology, Case Western Reserve University, Cleveland, OH, United States
Synopsis
Magnetic resonance fingerprinting offers a promising framework by which
to rapidly quantify T1rho relaxation alongside other tissue properties such as
T1 and T2. However, T1rho-MRF has only recently been reported and sequence
optimization remains under-explored, particularly for 3D sequences. Using a
digital phantom constructed from real knee tissue property maps, we investigate
sequence parameters for a 3D Cartesian T1rho-MRF sequence including preparation
pulse scheduling and timing, flip angles, number of readouts, and acceleration
factor. T1, T2, and T1rho quantification errors in cartilage and skeletal
muscle were evaluated.
Introduction
T1rho
relaxation has been reported as a biomarker of musculoskeletal disease,
particularly in the degeneration of knee cartilage in osteoarthritis1. However, quantification can be
prohibitively time consuming for widespread adoption. Magnetic resonance
fingerprinting (MRF) has recently been reported for the rapid, simultaneous
quantification of T1rho alongside other complementary tissue properties. However,
despite encouraging reports, T1rho-MRF sequence optimization remains
under-explored. Unlike the more typically applied MRF sequences that focus on
T1 and T2 quantification, T1rho-MRF requires the use of spin-lock preparation
pulses to sensitize the signal to T1rho relaxation. Thus, the design of
T1rho-MRF sequences has an additional layer of complexity, requiring the
selection of T1rho magnetization preparation schedules alongside considerations
of T1 and T2 sensitivity. This complexity prompts the current study.
T1rho-MRF
work has focused on 2D non-Cartesian methods2,3, which may behave differently from
3D Cartesian methods. Non-Cartesian MRF often requires calibration or may
suffer from gradient delays, concomitant gradients, or other k-space trajectory
related errors that can degrade image quality. Non-Cartesian MRF also requires
gridding operations that add additional computational burden beyond the typical
fast Fourier Transform (FFT) for Cartesian MRF. While Cartesian MRF may have
advantages in terms of computation or robustness to gradient-related errors,
the appearance of undersampling artifacts may be worse with Cartesian methods. Interactions
between the underlying MRF signal evolution and the superimposed undersampling
artifact are difficult to anticipate without experimentation, particularly with
the tissue property variations encountered in vivo.
In
this work, we investigate the impact of preparation pulse schedules, flip angle
pattern, acceleration factor, and number of readouts on T1, T2, and T1rho
quantification in cartilage and skeletal muscle. Methods
A realistic digital phantom was used for investigation
of T1rho-MRF sequences based on T1, T2, and T1rho maps from subjects. T1 maps
were obtained from a multislice 2D inversion recovery acquisition, while T2 and
T1rho maps were obtained from MAPSS4 acquired on a 3T
Prisma (Siemens) scanner from subjects after obtaining written informed consent
under an IRB-approved protocol. Tissue property maps were obtained with FOV=160
mm, resolution=0.5x0.5x3 mm3, and between 24-32 slices. Tissue
property maps were post-processed to create a knee mask and to replace poorly
estimated bone marrow T2 and T1rho with literature values5. Volumetric
regions of interest of articular cartilage from the femoral condyle and of skeletal
muscle from the gastrocnemius were manually drawn.
T1rho-MRF simulation used the digital phantom tissue
property maps to generate simulated data. Maps were rescaled to the simulated
T1rho-MRF resolution. In the T1rho-MRF sequence, the acceleration factor per
MRF frame, flip angle pattern, repetition time pattern (constant TR=10 ms),
echo time pattern (constant TE=5 ms), number of MRF frames, k-space sample
points, and preparation pulses (inversion, T2-prep, spin-lock) were defined for
a FISP-MRF sequence6 with 4π spoiling.
A Bloch simulator was used to generate MRF signal evolutions for the prescribed
sequence parameters. The tissue property maps were rounded to the nearest entry
in the dictionary and the signal evolutions were used to simulate contrast
changes over time. K-space sampling using a circular Cartesian trajectory
(CIRCUS7) was used.
Undersampled images for each MRF frame were computed by FFT. T1, T2, and T1rho
maps were computed by voxelwise inner product pattern matching or
wavelet-regularized low rank reconstruction8,9. Figure 1 shows
T1rho-MRF sequence components and the simulation workflow. Nominal parameters
unless otherwise stated were: R=12, flip angle as shown in Figure 1, 1000 MRF
frames, resolution 0.8x0.8x9.6 mm3, 10 slices, and preparation
schedules as shown in Figure 1 of the order: inversion (TI=21 ms), two T2-prep
pulses (TE=40, 80 ms), two spin-lock pulses (TSL=40, 80 ms).
The following T1rho-MRF sequence parameters were
investigated: (1) ordering of inversion, T2-prep, and spin-lock prep pulses,
(2) number of spin-lock preparation pulses, (3) replacement of T2-prep pulses
with spin-lock prep pulses, and (4) effect of acceleration factor. Root mean
squared error (RMSE) in muscle and cartilage ROIs were evaluated. Results
Figure
2 shows tissue property maps from preparation pulse experiments, (1)-(3).
Tissue property maps were reconstructed with inner product matching.
Figure
3 shows tissue property maps from the acceleration factor experiment (4).
Figure
4 shows mean T1, T2, and T1rho values from each T1rho-MRF sequence in muscle
and cartilage ROIs.
Table
1 shows RMSE of skeletal muscle and cartilage for the sequences investigated as
well as estimated scan time.Discussion
In simulations with realistic anatomy, 3D Cartesian
T1rho-MRF simultaneously quantified T1, T2, and T1rho of articular cartilage
and skeletal muscle at 0.8x0.8x9.6 mm3 resolution in <5 minutes via
low rank reconstruction. Sequence parameters were investigated, with best
results obtained when inversion and a combination of T2-preparation and
spin-lock preparation were used, although the relative scheduling of these
preparations had limited impact. We observed that more spin-lock preparations
did not necessarily improve T1rho quantification. Undersampling artifacts in 3D
Cartesian T1rho-MRF were severe, requiring modest acceleration (R=12) for
acceptable image quality from inner product matching, notably below acceleration
factors reported in other non-Cartesian MRF applications6. Wavelet regularized
low rank reconstruction mitigated undersampling artifacts, enabling
acceleration of up to R=48 with T1, T2, and T1rho quantification to between
0.1-6.9% error relative to ground truth. Although these findings are
encouraging for 3D T1rho-MRF, real-world evaluations are needed and currently
underway.Acknowledgements
This work was funded in part by the
following sources T32AR007505. The content is solely the responsibility of the
authors and does not necessarily represent the official views of the NIH.References
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