Alireza Fallahi 1, Mohammad Pooyan2, Jafar Mehvari-Habibabadi 3, Narges Hoseini Tabatabaei4, Mohammadreza Ay1,5, and Mohammad-Reza Nazem-Zadeh1,5
1Research Center for Molecular and Cellular Imaging, Tehran University of Medical Sciences, Tehran, Iran (Islamic Republic of), 2Biomedical Engineering, Shahed University, Tehran, Iran (Islamic Republic of), 3Isfahan Neuroscience Research Center, Isfahan University of Medical Sciences, Isfahan, Iran (Islamic Republic of), 4Medical School, Tehran University of Medical Sciences, Tehran, Iran (Islamic Republic of), 5Medical Physics and Biomedical Engineering, Tehran University of Medical Sciences, Tehran, Iran (Islamic Republic of)
Synopsis
In this study, six graph
theoretical measures were identified as nodal level epileptogenicity in TLE
patients using functional connectivity analysis. The aim of this study is to define
brain nodes that have significant difference between left and right TLE
patients using resting state functional connectivity analysis. Clustering
coefficient, degree centrality, betweenness centrality, node neighbor’s degree,
closeness centrality, and page rank were calculated as graph theoretical
characteristics and multi-dimensional scaling (MDS) was used as a statistical
method. Results of the applied method suggested significant nodes for
prediction of laterality in TLE patients.
Introduction
Temporal lobe epilepsy (TLE) is
the most frequent type of focal epilepsy in adults and also the most common
pharmacoresistant epilepsy accountable for surgical treatment. However, surgery
is not possible in about 30% of TLE patients due to a lack of clear localizing abnormality1,2
. In recent studies, different patterns of functional connectivity have
been identified between left and right TLE, including redistribution of global
functional activation in left TLE and functional impairments in right TLE 4,5,6
. Recently, some studies have reported
discrepant results provided by graph theoretical method for functional
connectivity. Clustering coefficient and characteristic path length, for
instance, have shown different trends, either an increase, a decrease, or a
no-change, altogether, in patients with epilepsy compared to controls 3,7
. Furthermore, the temporal instability in some topological characteristics has
inspired the investigations to capture the topology of particular functional
network configurations. In this study, we aimed
to use some graph theoretical characteristics for analyzing resting state fMRI and characterizing the nodal level differences
between the left and right TLE patients.Material and Methods
We studied 35 unilateral patients with left or right
temporal lobe epilepsy. Twenty-one patients had left TLE and 14 patients had
right TLE (19 females, 21 men; age range: 17-54; mean age 30.4 yrs). Patients
with disabling cognitive impairment or other patients with other neurological
disease were excluded. We asked from all subjects to relax, close their eyes
without sleeping and think nothing in particular. MRI data were collected using
a 3-Tesla scanner (Siemens Prisma, Erlangen, Germany) at National Brain Mapping
Laboratory (NMBL) in Iran. Anatomic images were acquired for clinical diagnosis
including transverse T1 weighted images (TR = 1840 ms, TE = 3.47 ms, matrix =
256
256, slice thickness = 1.0 mm). Functional images
covering the whole brain were acquired transverse using an echo planar imaging
sequence (TR = 3000 ms, TE = 30 ms, flip angle = 90, matrix = 640
640; 2.4mm thickness and 2.4 mm gap). For each
subject, the duration of each fMRI measurements was approximately 10 minutes,
and 330 volumes were obtained for each patient.
For each subject, the first 10 volumes were discarded. The remaining
320 volumes were first corrected for the differences in image acquisition time
between slices, and then realigned to the middle volume for head-motion
correction. Head motion parameters were computed by estimating translation in
each direction and angular rotation on each axis for all 320 volumes.
Participants with head motion greater than 3 mm or 3 degrees in any of the six
parameters were excluded. The realigned functional volumes were then spatially
normalized to the MNI space using the normalization parameters estimated by T1
structural image (voxel size [3, 3, 3]). Then, the datasets were smoothed using
Gaussian kernel (FWHM = 8 mm), detrended to remove linear trends, and
temporally filtered (0.01– 0.08 Hz) to decrease the effect of low-frequency
drifts. The images were segmented into 90 anatomical Region of interests (ROIs)
using Automated Anatomical Labeling (AAL) atlas 8,9 to extract the ROIs time-series. In each ROI the
mean time series of all voxels was considered as a ROI time series.
We calculated functional connectivity using the Pearson
correlation coefficient between each pair of ROI time courses representing
brain regional activity. For graph theoretical analysis we considered the
graph with 90 nodes. We applied a threshold on functional connectivity matrix;
the edges that were upper than the threshold remained as a substantial link between
nodes, and considered unweighted and undirected. We tested different values of proportional
threshold and the value of 0.8 showed the most robust results. Therefore, we
chose clustering coefficient and focused on centrality measures including degree
centrality, betweenness centrality, node neighbor’s degree, closeness
centrality, and page rank.
Multi-dimensional scaling (MDS) method was used to explore
similarities between individuals based on selected nodes. We considered those
nodes selected more than 300 times over 1000 repetitions using the Lasso method.Results
Fig.1 shows the selected nodes and the related networks. The clustering coefficient,
betweenness centrality and closeness centrality, were represented for the selected
nodes in sensory motor, default mode, attention, visual and subcortical
networks. The other graph measures (degree centrality node neighbor degree and
page rank) were not represented for the selected nodes. Fig. 2 shows the significantly different nodes
between left and right TLE groups.
Conclusion
In this work, we identified major differences
in cognitive networks using graph theoretical analysis of functional
connectivity in resting state fMRI data of TLE patients. We found that graph
theoretical measures of clustering coefficient and betweenness
centrality in some brain network nodes made significant difference
between left and right TLE. Accounting of complex characteristic of functional
connectivity, the graph theoretical
measures can be a prerequisite tool in searching for potential
connectivity-derived lateralization biomarkers in TLE.Acknowledgements
We must acknowledge the contribution of the
Iranian National Brain Mapping Lab (NBNL) for MRI data acquisition throughout
this project. This work was partially funded and supported by Iran’s National
Elites Foundation, National Institute for Medical Research Development (Grant
No. 971683), and Cognitive Sciences & Technologies Council (Grant No.
6431), between 2017 and 2021.References
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