Paul I Dubovan1,2, Kyle M Gilbert1,2, and Corey A Baron1,2
1Medical Biophysics, Western University, London, ON, Canada, 2Centre for Functional and Metabolic Mapping, Western University, London, ON, Canada
Synopsis
Concurrent field monitoring (FM) via integration
of field probes in a radiofrequency coil provides advantages over sequential
field monitoring that include patient-specific corrections, as well as
improvements to user workflow. However, specific design considerations can require
placing field probes far from isocentre where gradient fields are no longer
linear, reducing data integrity when fitting high order spatially varying terms.
We propose a three-part correction algorithm that seeks to correct these errors
and compare FM data, as well as reconstructed images, before and after
correction. Correction improved integrity of FM data and enhanced quality of anatomical
and diffusion weighted images.
Introduction
Field monitoring (FM) has shown
great utility for correcting field perturbations up to third order in space from
effects including eddy currents, heating, and mechanical vibrations1. This is performed by monitoring the
spatiotemporal field evolution, which can be described as2:
$$\boldsymbol{k}(t) = \boldsymbol{P}^{+}\boldsymbol{\phi}_{P}(t))\tag{1}$$
where φP(t) is the extracted probe phase, P+
is a pseudoinverse probing matrix of spherical harmonic basis functions that characterize
the phase, and k(t) which are the spherical harmonic basis
coefficients (k-coefficients) that describe the spatiotemporal field evolution.
FM can be performed sequentially, where
field cameras characterize field dynamics in an empty scanner, and the measurements
are used to correct images from a subsequent identical acquisition3.
Concurrent FM is performed simultaneous to patient scanning, and unlike sequential
FM, patient-induced perturbations are tracked, while also improving user
workflow4. This
is made possible by integrating field probes into a radiofrequency (RF) coil. Depending
on coil design and spatial constraints, the field probes may require placement
in the non-linear region of the gradient coil. Occupying this region can have adverse
effects on probe magnitudes and decay lifetimes. As a result, higher order fits
become erroneous, and images reconstructed with unreliable k-coefficients degrade
image quality.
We propose an algorithm that aims
to improve the integrity of FM data acquired with concurrent FM. Correction A accounts
for gradient non-linearity (GNL) by correcting probe positions and first-order
terms that are inputted into P+. This was made possible
by mapping the gradient field distribution inside the scanner via a spherical-harmonic
expansion, coupled with vendor-provided coefficients5. Secondly, k(t) is solved one order at
a time instead of simultaneously to avoid inaccurate fitting from simultaneous
fitting of all terms (Correction B). Lastly, to further penalize probes that
are farther in the non-linear region, weighted least squares is performed using
the following weighting scheme (Correction C):
$$W_j = 1/\left\|r_j\right\|_2^4\tag{2}$$
where W is a matrix of
probe weights and inversely depends on the Euclidean distance of probes from
isocentre.
In this work, the performance of
the correction algorithm is tested and compared to third-order sequential FM
correction. Methods
A healthy patient was scanned on a 7T head-only MRI (Siemens). Diffusion-weighted
single-shot spiral acquisitions were performed with a parallel imaging
acceleration factor of 4. The imaging parameters were: (FOV: 192 x 192 mm2,
in-plane resolution: 1.5 x 1.5 mm2, slice thickness: 3 mm, number of
slices: 10, TE/TR: 33/2,500 ms, BW: 2,170 Hz/pixel, flip angle: 70°, b = 0 s/mm2
acquisitions: 1, diffusion directions: 6, b-value: 1000 s/mm2). B0
field maps (in-plane resolution: 1.5 mm, slice thickness: 3 mm) were acquired
for inclusion in a model-based image reconstruction6. FM was
performed simultaneously using 16 transmit/receive 19F commercial field
probes (Skope) that are integrated into a 32-channel RF head coil7. Image reconstruction
was performed in MATLAB using in-house developed software that uses an iterative
expanded encoding model-based reconstruction1. Images were
reconstructed using up to third-order k-coefficients that were generated and
corrected using the algorithm described in Figure 1. Reconstructions using
subsets of the three steps of the correction were also performed to determine each
component’s efficacy. For comparison to sequential FM correction, images were
corrected using FM data from an identical acquisition acquired when field
probes were situated on the manufacturer’s scaffold. Results
The difference in k-coefficients relative to the
third-order scaffold fit (Fig. 2a) decreased significantly from the uncorrected
case to correction A and also to correction A&B (Fig. 2b). Small differences
were also observed when adding weighted least squares to obtain the full
correction. In Figure 3, full correction showed significant improvement for a
diffusion weighted image (DWI), while the correction improvement for the scaffold
case was incremental. Overall reduction in blurring was observed for the
corrected in-coil image relative to the corrected on-scaffold image. Figure 4
illustrates for a b = 0 image and DWI the effectiveness of each correction
technique, with the addition of the first two correction steps noticeably
reducing the error relative to the “gold standard” fully corrected image. Discussion
Overall, images showed less blurring for concurrent monitoring with
correction compared to sequential monitoring (with or without correction) (Fig. 3). This observation shows
the added benefits of concurrent FM, which corrects for time-varying effects
like frequency drift due to heating. The incremental improvement to image
quality of scaffold data was expected due to the scaffold’s accurate
measurements. The utility of GNL correction is evidenced by the reduction in
the k-coefficient difference relative to the uncorrected case. This is further
demonstrated by the higher quality of GNL-corrected images (Fig. 4). The step-wise
estimation of k(t) shows substantial improvement in image
quality, suggesting that it provides the largest benefit of the three
strategies employed. Accordingly, solving k(t) one order
at a time allows for a more accurate estimation of each order, while reducing
the chances of over/under-fitting lower order terms. While not having a substantial
effect on correction, the weighted least squares fit nevertheless helped decrease
blurring (Fig. 4). Conclusion
A correction algorithm that successfully improves
the reliability of higher order concurrent FM data is presented and validated. This
motivates the production of reproducible images for anatomical and functional imaging,
as shown by spiral DWI presented in this work. Acknowledgements
This work has been supported by the Natural Sciences
and Engineering Research Council of Canada (NSERC), Canada Research Chairs, Canada First Research
Excellence Fund to BrainsCAN, and the NSERC PGS D program.References
1.
Wilm BJ, Barmet C, Pavan M, Pruessmann KP. Higher order reconstruction for MRI
in the presence of spatiotemporal field perturbations. Magnetic Resonance in
Medicine 2011;65:1690–1701 doi: 10.1002/mrm.22767.
2.
Barmet C, de Zanche N, Pruessmann KP. Spatiotemporal magnetic field monitoring
for MR. Magnetic Resonance in Medicine 2008;60:187–197 doi: 10.1002/mrm.21603.
3.
Dietrich BE, Brunner DO, Wilm BJ, et al. A field camera for MR sequence
monitoring and system analysis. Magnetic Resonance in Medicine
2016;75:1831–1840 doi: 10.1002/mrm.25770.
4.
Kennedy M, Lee Y, Nagy Z. An industrial design solution for integrating NMR
magnetic field sensors into an MRI scanner. Magnetic Resonance in Medicine
2018;80:833–839 doi: 10.1002/mrm.27055.
5.
Janke A, Zhao H, Cowin GJ, Galloway GJ, Doddrell DM. Use of spherical harmonic
deconvolution methods to compensate for nonlinear gradient effects on MRI
images. Magnetic Resonance in Medicine 2004;52:115–122 doi: 10.1002/mrm.20122.
6.
Wilm BJ, Barmet C, Gross S, et al. Single-shot spiral imaging enabled by an
expanded encoding model: Demonstration in diffusion MRI. Magnetic Resonance in
Medicine 2017;77:83–91 doi: 10.1002/mrm.26493.
7.
Gilbert KM, Dubovan P, Gati JS, Menon RS, Baron CA. Integration of a
radiofrequency coil and commercial field camera for ultra-high-field MRI. bioRxiv
2021:doi: 10.1101/2021.09.27.462001.