Jonathan Weine1, Stefano Buoso1, and Sebastian Kozerke1
1Institute for Biomedical Engineering, University and ETH Zurich, Zürich, Switzerland
Synopsis
Cardiac diffusion tensor imaging
(cDTI) as well as cardiac strain imaging both offer invaluable information on
the functional state of the heart. Acquiring both, takes too long to be
clinically feasible. Free breathing, cDTI acquisition with second-order motion
compensated diffusion encoding waveforms display residual phase variations,
that encode higher orders of contractile motion during the diffusion encoding
process. This work presents a theoretical framework on how to jointly infer
strain and diffusion tensors from complex-valued cDTI data with varying trigger
delays.
Introduction
Cardiac Diffusion Tensor Imaging
(cDTI) provides invaluable information about the state of myocardial
microstructure in both healthy and diseased conditions1–4. To address signal loss due
to contractile motion during the diffusion encoding process, second-order
motion-compensated (M012) diffusion waveforms with spin-echo sequences have
been established5. The signal loss occurs due
to the spatial gradient of phase directly relating to myocardial strain6, which potentially can serve
as indicator of pathological cardiac function7–9. For myocardial material
point trajectories with motion terms higher than second order, the phase of cDTI
data contains surrogate motion related to macroscopic strain. At the same time,
macroscopic strain during diffusion encoding affects diffusion tensor
estimation6 and hence needs to be taken
into account. Therefore, it is appealing to aim at deriving both diffusion and
strain information from a single cDTI exam.
In this study we investigate the
feasibility of jointly deriving strain and diffusion tensors from complex-valued
M012-SE cDTI data. To this end, we present a theoretical framework for a simplified
analytical motion model as well as general contractile motion. Furthermore, we show
how our simulation allows the direct evaluation of the strain tensor for an analytic
trajectory as well as the generation of labeled data for realistic contractile
motion.Methods
Cardiac model The digital phantom used in this work, is based on a biophysical mesh model of a contracting left ventricle (LV)
10. Prior to simulation the mesh was refined, and a subset of nodes was selected forming a slice of 8 mm thickness perpendicular to the LV-long-axis. Random smoothly varying diffusion tensors were assigned to each mesh node
11. Two trajectories $$$\mathbf{r}_{i,analytic}(t)$$$ and $$$\mathbf{r}_{i, realistic}(t)$$$ were assigned to each node, where $$$\mathbf{r}_{i,realistic}(t)$$$ was obtained from biophysical simulation and $$$\mathbf{r}_{i,analytic}(t)=\mathbf{r}_{i,0}+\mathbf{k(r_{i,0})}\sin(ct)$$$ describes planar, radial pseudo contractile motion.
TheoryAssuming separation of the scales for contractile macroscopic motion and microscopic tissue diffusion, one can describe the diffusion effect as magnitude attenuation and the contractile motion as a phase effect. Further assuming a material point representing an ensemble of spins is assigned a diffusion tensor and a motion trajectory, then the phase of a material point, after applying diffusion gradient $$$g_j(t)$$$ evaluates as:
$$\phi_j(\tau,\mathbf{r_0})=\gamma\int_0^Tg_j(t)\mathbf{r}(t-\tau,\mathbf{r_0})\cdot\mathbf{n}_jdt,$$
where $$$\tau$$$ denotes the trigger delay. Furthermore, the displacement $$$\mathbf{u}(\tau, \mathbf{r_0};T)$$$ of a material point at $$$\mathbf{r_0}$$$ during the encoding period $$$T$$$ is given as:
$$\mathbf{u}(\tau,\mathbf{r_0};T)=\mathbf{r}(\tau+T,\mathbf{r_0})-\mathbf{r}(\tau,\mathbf{r_0}).$$
Simplified analytic motion model
For
$$$\mathbf{r}_{i, analytic}(t)$$$, the relation
between phase and displacement can be derived directly with following steps:
- Replace $$$\mathbf{r}(t-\tau,\mathbf{r}{0})(t)$$$by its Taylor expansion in equation (1)
- All terms of the integral with quadratic or lower order in $$$t$$$ evaluate to zero, yielding a direct relation between the phase and the spatially varying amplitude $$$\mathbf{k(r_0)}$$$
- Insert $$$\mathbf{r}_{analytic}(t)$$$ into equation (2) and replace $$$\mathbf{k(r_0)}$$$ with the expression obtained fro the previous step, which yields:
$$\mathbf{n}_j\cdot\mathbf{u}(\tau,\mathbf{r_0})=\phi_j(\tau,\mathbf{r_0})\frac{\sin(c(\tau+T))-\sin(c\tau)}{c^3\gamma\int_0^Tg(t)(t-\tau)^3dt}\\\rightarrow\hat{\mathbf{u}}(\tau,\mathbf{r_0})=\arg\min_u\sum_j\left|\mathbf{n}_j\cdot\mathbf{u}(\tau,\mathbf{r_0})-\phi_j(\tau,\mathbf{r_0})\frac{\sin(c(\tau+T))-\sin(c\tau)}{c^3\gamma\int_0^Tg(t)(t-\tau)^3dt}\right|^2$$
General contractile motionA relation
between the displacement and the phase of diffusion encoded images for
non-parameterized motion can be obtained by the following steps:
- Assume the Taylor expansion $$$\mathbf{r}(t,\mathbf{r_0})\approx\mathbf{r_0}+\mathbf{v(r_0)}t+\mathbf{a{r_0}}t^2+\mathbf{j(r_0)}t^3$$$ describes the trajectory of material points in the myocardium.
Again, using the second order motion compensation of the waveform, the residual
phase encodes the jerk $$$\mathbf{j_0}$$$ according to: $$\phi_j(\tau,\mathbf{r_0})=\gamma\mathbf{n}_j\cdot\mathbf{j_0}\int_0^Tg(t)(t-\tau)^3dt$$
- Evaluate the
derivative of displacement (2) with respect to the trigger delay $$$\tau$$$, where $$$\mathbf{r}(\tau+T,\mathbf{r_0})$$$ and $$$\mathbf{r}(\tau,\mathbf{r_0})$$$ are approximated using the Taylor expansion: $$\frac{\partial\mathbf{u}(\tau,\mathbf{r_0};T)}{\partial\tau}\approx2T\mathbf{a(r_0)}+\mathbf{j(r_0)}[3T^2+6T\tau]$$
- From combining the two previous expression follows: $$\mathbf{n}_j\cdot\mathbf{u}(\tau,\mathbf{r_0})=2T\tau(\mathbf{n}_j\cdot\mathbf{a(r_0)})+(\mathbf{n}_j\cdot\mathbf{c(r_0)})+\int\phi_j(\tau,\mathbf{r_0})\frac{3T^2+6T\tau}{\gamma\int_0^Tg(t)(t-\tau)^3 dt}d\tau$$
SimulationA graphical summary
of the simulation experiments for $$$\mathbf{r}_{i,analytic}(t)$$$ as well as $$$\mathbf{r}_{i,realistic}$$$ is given in Fig. 1. Simulation was performed
by evaluating (1) on a temporal grid with $$$\Delta t=0.1ms$$$ for all mesh
points, where the diffusion gradient was defined according to Stoeck et al.
5 Furthermore, for each particle with the
associated diffusion tensor $$$\mathbf{D}$$$, the factor $$$\exp(-b\mathbf{n^T}_j\mathbf{D}\mathbf{n}_j)$$$ was evaluated. This is followed by a single shot echo planar imaging
readout. To obtain reference displacements on image resolution, a displacement
encoding simulation was performed in the same fashion. Both simulations were
repeated for varying trigger-delays for $$$\mathbf{r}_{i,analytic}(t)$$$ as well as $$$\mathbf{r}_{i,realistic}$$$.
Additionally, the direct inversion according to equation (4) was performed
using varying SNR values during simulation.
Results
Figure 2 illustrates the simulated
motion trajectories. Simulation results for displacement encoding and diffusion
weighted images are shown in Fig. 3. The displacement fields derived from
displacement encoding and the ones from solving equation (4) for
for multiple SNRs are presented in Fig. 4. Figure 5
shows a qualitative comparison of in-vivo data and the simulated signal with
biophysically modelled contractile motion.Discussion
The simulation results for analytic motion show the feasibility of deriving both macroscopic strain and microscopic tissue diffusion from the same cDTI imaging protocol. Furthermore, the qualitative comparison of image phase across the LV for in vivo data and our simulation using the biophysical LV model yields qualitative agreement. The relation of displacements and residual phase in cDTI data is very complex as the provided theory demonstrates. Therefore, directly inferring the displacements from real data might be challenging especially when including respiratory motion and assuming low SNR. Training neural networks to perform such inversions on synthetic data was shown to be feasible11,12. Hence, training a neural network on our simulated data appears a promising next step.Acknowledgements
No acknowledgement found.References
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