Andrew Tyler1,2, Moritz Hundertmark1, Jack J. Miller1,2,3,4, Oliver J. Rider1, Damian J. Tyler1,2, and Ladislav Valkovic1
1OCMR, University of Oxford, Oxford, United Kingdom, 2Department of Physiology, Anatomy & Genetics, University of Oxford, Oxford, United Kingdom, 3Department of Physics, University of Oxford, Oxford, United Kingdom, 4The MR Research Centre, Aarhus University, Aarhus, Denmark
Synopsis
Using
the SLAM
algorithm
to reconstruct non-gated acquisition weighted 31P cardiac CSI data-sets improved repeatability by 35% and reduced
variation by 23%, compared to a Fourier based reconstruction of the same data-set, without
requiring a change to acquisition protocol.
Introduction
Cardiac phosphorus (31P) MRS is a powerful technique for assessing
metabolic derangements, as well as novel therapies for patients with heart failure in-vivo, particularly
through measurement of the phosphocreatine-to-adenosine-triphosphate
(PCr/ATP) ratio[1]. Unfortunately, measurements of the PCr/ATP ratio
suffer from significant variability, leaving clinical studies with low
statistical power, making it difficult to draw conclusions without large
patient cohorts.
Since the introduction of 31P MRS,
numerous strategies have been pursued to improve the repeatability of
the measured PCr/ATP ratio, including improving the quality of the
spectral fit by increasing SNR[2,3], using cardiac/respiratory[4]
gating, or improving localization accuracy[3,5].
Unfortunately,
while cardiac gating has been shown to improve spectral quality[4],
scan time may be increased by up to 2x if the TR and R-R interval are
similar. In this work we investigate if using the SLAM reconstruction
algorithm (which incorporates a segmented localizer into the
reconstruction, producing one spectra per segmented region, and
expanding the VOI to the whole heart), as opposed to a Fourier based
method, can improve repeatability to a
similar extent as cardiac gating, when reconstructing un-gated, acquisition-weighted (AW) data.
Furthermore we use
the SLAM algorithm to reconstruct 31P cardiac scans of five patients
with heart failure, to investigate whether the potential improved
repeatability may help recognize differences in PCr/ATP in a small
patient population.Methods
Six healthy volunteers (2F/4M) were scanned twice, using a Siemens
TIM Trio 3T MRI scanner (Erlangen, Germany), with a short break outside
of the scan room between scans. Volunteers were positioned in the prone
position, with their hearts over the coil, consisting of a 1H/31P dual
tuned 26×28 cm transmit/receive loop and a dual 12×15 cm butterfly
31P receive pair[6]. CSI-matched 1H images were acquired to provide the
localizer for the SLAM reconstruction, followed by two 31P acquisitions
(with/without cardiac gating), consisting of a UTE-CSI sequence[7].
Three saturation bands were used to null the signal from the chest wall
and liver. All 31P acquisitions were acquisition weighted, had a FOV of
240x240×200 mm, with a matrix size of 16x8x8, and in the absence of
cardiac gating, took 10.5 minutes to complete with a nominal TR of 0.9
s. Cardiac gating was prospective and triggered the acquisition to
coincide with diastole.
The same acquisition (no cardiac gating) was used for the patient
cohort (2F/3M, BMI = 36 ± 5 kg/m2, age = 69 ± 9 years) who all had heart
failure with preserved ejection fraction (HFpEF).
The SLAM reconstructions were performed using an implementation of
the algorithm[3] produced in MATLAB, and the CSI reconstructions were
performed using a Fourier based method, spectra produced with both methods
were then fitted with the OXSA Matlab toolbox AMARES implementation. For
each fitted spectrum, PCr/ATP ratios and CLRBs, as well as PCr SNR and coefficients
of repeatability (CoR) and variation (CoV) (for the PCr/ATP ratio) were computed. Sign-rank
Wilcoxon tests were used to compare the methods with the un-gated CSI method.Results and Discussion
An example segmentation mask is shown in Figure 1, along with the resultant
SLAM reconstruction spectrum of the cardiac compartment. Each of the
expected resonances is clearly visible and the SNR is sufficient to
produce a high quality fit, with no visible PCr contamination from the
chest wall.
A table detailing all computed results is shown in Figure 2 with
box-plots of the volunteer study and clinical data-set shown in Figures 3
and 4.
The gated CSI method showed a reduction in both coefficients of
variation and repeatability over the un-gated CSI method in healthy
volunteers, despite there being no change to the CRLB of the fit. This
suggests that cardiac motion may be a
significant source of variation. Strikingly, both the gated and un-gated
SLAM methods perform similarly to the gated CSI, despite both having
significantly lower CRLBs than the un-gated CSI. This suggests that in
both cases the effect of cardiac motion is reduced, either by the larger
VOI encompassing the whole heart across the full cardiac cycle, or
by this, in combination with cardiac gating. Reassuringly the correlation plots
in Figure 5, which compare each of the methods to un-gated CSI show that
the reduction in variation (represented by the negative gradient of the line) is
equivalent for gated SLAM and gated CSI, and only slightly lower for
un-gated SLAM. Hence, the reduction in variation for SLAM is genuine,
and not just a result of a reduction in sensitivity caused by averaging
over the expanded VOI.
Comparing the SLAM and CSI reconstructions of the main study to the
HFpEF data-set (where a lower PCr/ATP ratio can be expected) highlights
the experimental utility of the technique, using a two-tailed Welch’s
t-test the SLAM reconstructions showed a significant difference in
PCr/ATP ratio (p=0.0233) even in this small sample size, whereas the CSI
reconstruction did not (p=0.1606).Conclusion
Using the SLAM algorithm to reconstruct un-gated acquisition weighted
CSI data-sets reduces the coefficient of variation by 23%, and the coefficient of repeatability by 35% in healthy controls, compared to a Fourier based
reconstruction, without requiring a change to acquisition protocol.Acknowledgements
This work was supported by the Engineering and Physical Sciences Research Council (EPSRC) and Medical Research Council (MRC) (EP/L016052/1). All authors acknowledge the support of the British Heart Foundation (BHF) (FS/19/18/34252), the Oxford BHF Centre for Research Excellence (RE/13/1/30181) and the UK National Institute for Health Research (NIHR). JJM acknowledges support from a Novo Nordisk Postdoctoral Fellowship scheme run in conjunction with the University of Oxford, and also by St Hugh’s and Wadham college. LV was supported by a Sir Henry Dale Fellowship from the Wellcome Trust and the Royal Society (221805/Z/20/Z). LV also acknowledges the the Slovak Grant Agencies VEGA(2/0003/20) and APVV (19-0032).
We thank Paul Bottomley for providing code used in the implementation of the SLAM algorithm.
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