Fabian J Kratzer1, Sebastian Flassbeck1,2,3, Sebastian Schmitter1,4, Tobias Wilferth5, Peter Bachert1, Mark E Ladd1, and Armin M Nagel1,5
1Medical Physics in Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany, 2Center for Biomedical Imaging, New York University, New York, NY, United States, 3Center for Advanced Imaging Innovation and Research, New York University, New York, NY, United States, 4Physikalisch Technische Bundesanstalt (PTB), Braunschweig and Berlin, Germany, 5Institute of Radiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen Nürnberg (FAU), Erlangen, Germany
Synopsis
This work
investigates the bias in the quantified relaxation times due to partial volume contributions
of CSF for 23Na magnetic resonance fingerprinting (MRF) and
reference methods.
In
simulations, a CSF contribution of only 10% resulted in an overestimation of 17%
(31%) in T2l* in brain tissue for MRF (the reference).
Further, a
simple approach for CSF bias correction for 23Na MRF is proposed.
This reduced the average absolute T1 deviation in brain tissue from
15% to 4%. The deviation in T2l* (T2s*)
was reduced from 17% (35%) to 9% (5%).
Finally, the
correction was applied to in vivo MRF data.
Introduction
Sodium (23Na) relaxation times were
found to be altered in several diseases1-3, which motivates 23Na
MR relaxometry. We recently proposed using magnetic resonance fingerprinting (MRF)
for simultaneous mapping of T1, T2l*, T2s*,
T2* and ΔB04. However, the large voxel volumes commonly
applied in 23Na MRI make partial volume (PV) effects likely to
occur. Especially at the borders between brain tissue and cerebrospinal fluid (CSF),
a bias in the quantified tissue parameters due to CSF signal contributions is expected.
As an example, Figure 1 shows the brain relaxation parameter maps obtained with
23Na MRF in a healthy volunteer. Red arrows indicate areas where a bias
of the quantified parameters due to CSF contributions appears to be especially likely.
Hence, the aim of this work was to investigate
how potential CSF contributions alter the quantified relaxation times for the
MRF framework and reference methods.
Further, an approach for CSF bias correction in
the MRF framework is proposed.Methods
A simulation study was conducted to estimate
the parameter bias in the MRF framework introduced by the presence of CSF. Here,
a WM-simulating fingerprint (T1=40ms,T2l*=30ms,T2s*=4.8ms)
was combined with a CSF fingerprint (T1=60ms,T2*=T2l*=T2s*=50ms)
with varying weights (1%-100%; 1% steps). The apparent relaxation parameters
were then reconstructed by matching the signals to the dictionary. Since the dictionary contains parameter
combinations with bi- and monoexponential transverse relaxation, this approach
intrinsically determines the relaxation model that better matches the data.
As a reference, similar simulations were
performed for an inversion recovery (IR) and an FID signal curve. The
theoretical signal evolutions were calculated via
$$S(TE)=0.6exp(-TE/T_{2s}^*)+0.4exp(-TE/T_{2l}^*) [1]$$
and
$$S(TI)=1-2exp(-TI/T_1). [2]$$
Here, 20 TI (TE) samples were equidistantly
distributed between 5ms (0.5ms) and 250ms (50ms). Again, the signal evolutions
of CSF and WM were summed with varying weight.
Next, the relaxation models [1] and [2] were fitted to
the data. For transverse relaxation, both
a bi- and a monoexponential relaxation model were applied and the
differentiation was based on the goodness of the fit R2. Here, T2s*
(T2l*) was constrained to a range of 1ms (10ms) to 20ms (90ms).
Next, a PV correction (PVC)
was implemented to decrease the CSF bias in the MRF results as inspired by5,6,
applicable to both simulations and measurements:
First, temporary MRF results
are reconstructed4,7 and the relaxation parameters of CSF are
determined in the center of the ventricles. In the simulations, the CSF
parameters are input parameters and therefore known.
Next, the following
procedure is performed in all biexponential (tissue dominated) voxels:
1. Extract ΔB0 from the
temporary MRF results
2. Construct sub-dictionary
containing all entries with this ΔB0 value
3. Identify the
dictionary entry with the CSF relaxation parameters
4. Add the CSF fingerprint
with varying weight (0%-100%; 5% steps) to each dictionary entry
5. Normalize each
entry using the L2-norm
6. Find the best
match within the new dictionary.
This approach was tested in
the PV simulation data for the noiseless case. Next, 30 simulations were
conducted in the presence of complex Gaussian noise and the resulting
parameters were averaged. The noise level was adjusted such that the standard
deviation in T1 of 100 WM simulations was approximately 10% of the
input T1.
Finally, the CSF correction
was applied to the in vivo data shown in Figure 1.Results
The reconstructed relaxation parameters from
the noise-free PV simulations are illustrated in Figure 2. The MRF approach detected
a biexponential relaxation for 0%-48% CSF contribution and a monoexponential
decay otherwise. The reference FID determined biexponential relaxation for CSF contributions
up to 78%. For 10% and 20% CSF, MRF overestimated T2l* by
17% and 27% with respect to the WM input, whereas the reference deviated by 31%
and 53%. For CSF contributions above 30%, the reference determined T2l*
values larger than both T2,CSF* and T2l,WM*.
In T2s*, MRF found deviations of 8% and 27% for 10% and
20% CSF, whereas the reference deviated by 13% and 35%.
The results of the noise-free MRF simulation after
PVC are illustrated in Figure 3. The input parameters of WM were well recovered
with a maximal deviation of 1ms in T1, -4ms in T2l*
and 0.1ms in T2s*. In presence of noise (Figure 4), the average
absolute difference in the uncorrected T1 was 15%, while the
corrected T1 differed by 4%. For the T2l*, the
uncorrected (corrected) deviation was 17% (9%) and for T2s*
a deviation of 35% (5%) was found.
The results of the PV-corrected in vivo
measurement are shown in Figure 5, where all relaxometric parameters in brain
tissue were reduced after PVC.Discussion and Conclusion
The findings of this work suggest that PV
contributions of CSF can lead to a high bias in relaxometric parameters and
that a PVC might be useful in 23Na relaxometric measurements.
We propose a simple approach to correct for CSF
bias that could be applied similarly to IR and FID techniques. However, this
approach allows only correction for CSF contributions as the separation of
arbitrary tissues is computationally much more expensive and might require higher
SNR6.
Nevertheless, in simulations the PVC reduced
the CSF bias in brain tissue parameters in all cases and lowered the quantified
relaxation times in the in vivo measurement as expected.Acknowledgements
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