Wyger Brink1, Marius Staring2, Rob Remis3, and Andrew Webb1
1C.J. Gorter Center for High Field MRI, dept. of Radiology, Leiden University Medical Center, Leiden, Netherlands, 2Division of Image Processing, dept. of Radiology, Leiden University Medical Center, Leiden, Netherlands, 3Circuits and Systems group, dept. of Microelectronics, Delft University of Technology, Delft, Netherlands
Synopsis
This
work presents a method for local SAR and B1+
prediction using only a 9 seconds long localizer as input. The total procedure can be
executed in less than 30 seconds for a birdcage setup and less than
45 seconds for an eight-channel PTx configuration, enabling seamless integration into the
MR workflow.
Introduction
Ultra-high field
(UHF) MRI (B0>7T) shows great promise to yield higher
resolution structural and physiological information than available at 3T,
particularly in the brain. Parallel RF transmission (PTx) is a key technology for
UHF-MRI to address the increased spatial variations in the radiofrequency (RF)
field distribution. However, currently it has failed to reach widespread
clinical adoption. The main factors include the intersubject variability in local
specific absorption rate (SAR), which leads to large safety margins to ensure
compliance to regulatory limits1,2, and time-consuming B1+
calibration procedures required for tailored RF pulse design. Together, these technological
challenges limit the clinical impact of PTx and the utilization of UHF-MRI.
In this work, we demonstrate a fast subject-specific method based
on deep learning and a fast EM solver for predicting both local SAR and B1+
fields using only a 9 second long localizer scan. A schematic overview of the
approach is shown in Figure 1.Methods
MR protocol: Data was acquired in 20 healthy volunteers (10 male, 10 female, age
range 21-66 years) on a Philips Achieva 7T MRI system equipped with a Nova
Medical birdcage head coil and integrated 32-channel receive coil array. The
imaging protocol consisted of a 3D T1-weighted MP-RAGE sequence
acquired at 1 mm isotropic resolution in 3 min, followed by a fast 3D T1-weighted localizer acquired at 2 mm isotropic
resolution in 9 s.
The 1 mm T1-weighted
data were first used to generate subject-specific dielectric body models with eight
tissue classes using our recently developed deep
learning segmentation method3. The resulting material parameter maps (i.e. permittivity, conductivity,
density) were subsequently downsampled to 2 mm and used as ‘ground truth’ data for
training the deep learning network with the localizer as input.
Deep Learning: A 2.5D convolutional neural network was implemented based on the
ForkNET topology4. The network was designed to have one input
and 5 outputs, consisting of the three tissue parameters and additional masks
for the background and internal air. The network was implemented using TensorFlow
and trained in 100 epochs using a mean squared error loss function. To ensure
generalizability, the results were tested in a leave-one-out manner, in which
the test subject was excluded from the training data.
EM Solver: The B1+
field and 10 g-averaged SAR distribution (SAR10g) in the ground
truth and localizer-based body models were simulated using a previously developed
custom EM solver based on the volume integral equation method5. The solver employs a numerical Green’s tensor
computed via FDTD and includes a pre-computed coil response library to account
for the loading of the RF coil. Incident fields for a quadrature birdcage as
well as a generic PTx loop array were simulated using FDTD (XF7.4, Remcom inc., State
College, PA) and the solver was implemented in Matlab (2021a, Mathworks inc.,
Natick, MA) facilitating parallel computing and GPU acceleration through an
Nvidia K40 GPU. Channelwise E-fields were combined to construct Q-matrices,
averaged over 10 g and processed into a SAR oracle format to facilitate
efficient SAR evaluation6,7.Results
Training of the deep
learning network took approximately 160 min and final inference took approximately
1s per subject. A comparison between ground truth and localizer-based
dielectric body models is shown in Figure 2.
Figure 3 shows a convergence analysis of the EM solver with
respect to discretization step size, evaluated in the birdcage configuration.
The peak local SAR error drops below ~1% on average for spatial resolutions of
4.0 mm and higher, which strikes an appropriate balance with an average
computation time of 12s. In the eight-channel PTx configuration, the average computation
time was 32s, including parallel computing overhead.
Quadrature birdcage simulations
in five of the ground truth and localizer-based body models are shown in Figure
4. Overall, peak SAR10g values obtained in the network generated
body models are within 5% of those obtained in the ground truth body models.
Peak SAR10g predictions in 1000 random PTx excitations
were evaluated against those obtained in the corresponding ground truth body
models, summarized in Figure 5. The average peak SAR10g overestimation
in the localizer-based models was 2.2% and an additional 6.3% safety margin
would be required to ensure a conservative local SAR estimate in 95% of the
cases. This is a considerable improvement compared to the average
overestimation of 45.2% that would be obtained by assuming worst-case
local SAR values.Discussion/Conclusion
This
work presents a method for local SAR and B1+
prediction using only a short localizer as an input. The total procedure can be
executed in less than 30 seconds for the birdcage and less than
45 seconds for the PTx configuration, enabling seamless integration into the
MR workflow. As a localizer is acquired at the start of any MR protocol, and
the resulting B1+ information can replace time-consuming B1+
calibration procedures, the method does not place a time burden on the MR examination. The SAR predictions can be used to personalize the safety
margins, design SAR-optimized RF pulses to safely increase the headroom in allowed
sequence parameters.Acknowledgements
The authors thank Dr. Chloé Najac and Kevin Keene for assistance in data acquisition. This work was supported by the Nederlandse Organisatie voor Wetenschappelijk Onderzoek (NWO) through a VENI fellowship (TTW.16820).References
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