Santhosh Iyyakkunnel1,2, Carl Ganter3, Francesco Santini1,2, and Oliver Bieri1,2
1Department of Radiology, University Hospital Basel, Basel, Switzerland, 2Department of Biomedical Engineering, University of Basel, Basel, Switzerland, 3Department of Radiology, Technical University of Munich, Munich, Germany
Synopsis
Permittivity
mapping strongly depends on the accuracy and the signal-to-noise ratio (SNR) of
the underlying B1+ magnitude estimation method. In this
work, we assess the suitability of a transient phase SSFP method, termed
B1-TRAP, for permittivity mapping and compare this B1+
mapping method with the commonly-used Actual Flip Imaging (AFI) method.
Introduction
Permittivity mapping strongly depends on the
accuracy and the signal-to-noise ratio (SNR) of the underlying B1+
magnitude estimation method. An assessment of different B1+
mapping techniques in the context of permittivity mapping has recently been
conducted1.
Another promising candidate, termed B1-TRAP (B1+-mapping
with TRAnsient Phase SSFP)2,
however, has not been investigated so far for its applicability to permittivity
mapping. In this work, the B1-TRAP is directly compared to Actual Flip Imaging
(AFI) for permittivity mapping in phantom and in vivo.Methods
The quality
of AFI and B1-TRAP for permittivity
reconstruction was assessed for in vivo human brain and for a
spherical water phantom (relative permittivity = 80) doped with 0.125 mM MnCl2
to obtain tissue comparable relaxation times (T1 ~ 870 ms, T2 ~ 70 ms).
For AFI, a
non-selective excitation pulse with a flip angle of 45° was used with a TR2 /
TR1 = 125 ms / 25 ms, a TE = 4.86 ms, a bandwidth of 120 Hz/Px and an RF phase difference
increment of 129.3°. An imaging matrix of 88×64×64 was used, yielding an
isotropic voxel size of 2.5 mm. The local flip angle was estimated from the
signal ratio $$$r$$$ = S2/S1 and the TR ratio $$$n$$$ = TR2/TR1 = 5 using $$$\alpha\approx\arccos\left[\left(rn-1\right)/\left(n-r\right)\right]$$$. In
contrast, B1-TRAP derives the local flip angle directly from the transient FID
signal oscillations of steady-state free precession (SSFP). For B1-TRAP, a flip
angle of 60° was used for the acquisition of a train of 24 echoes with a
bandwidth of 250 Hz/px. In contrast to the AFI, which was acquired in 3D, B1-TRAP acquired 31 interleaved slices (with 100% slice distance) with 2.5 mm in plane
resolution and 2.5 mm slice thickness within a TR of 5 s. Two scans were
performed, resulting in a total of 62 slices and a resolution similar to the AFI method. The
local flip angle was estimated using a dictionary. To this end, the B1-TRAP
signal was simulated using the configuration model toolkit3 as a function of the flip angle and
over a range of T1
and T2 relaxation times.
Overall, B1+
mapping with AFI took about 14 minutes and about 11 minutes for B1-TRAP. All
scans were carried out on a 3 T clinical MR system (Magnetom Prisma; Siemens
Healthcare, Erlangen, Germany) using a 20-channel head coil.
Finally,
the permittivity was reconstructed from the obtained B1+ maps using4:
$$\varepsilon_r\approx-\frac{\nabla^2\left|B_1^+\right|}{\mu\varepsilon_0\omega^2\left| B_1^+\right|}\tag{1}$$
The Laplacian
was estimated by local parabola fitting proposed by Katscher et al5 and subsequently smoothed with a
tissue boundary–preserving median filter5. The window size for both the
Laplace estimation and the median filter was set to 15×15×15 voxels for the
phantom and to 21×21×21 voxels for the brain. For AFI, the TR1 magnitude images,
and for the B1-TRAP, the inverted T2 map, is used as constraint
image for the parabola fitting and boundary-preserving median filtering.Results
Figure 1 shows for AFI and B1-TRAP
an exemplary magnitude slice, together with the corresponding B1+
and the reconstructed permittivity. The AFI permittivity shows a slight
inhomogeneity towards the edges of the phantom whereas the permittivity map
using B1-TRAP appears more homogenous. For a large region of
interest (ROI), relative permittivities of 78.0 ± 4.2 with AFI
and 80.6 ± 4.2 with B1-TRAP were found. Figures 2 and 3 show exemplary axial and sagittal images of the in-vivo brain, respectively.
Visually, both permittivity maps are of similar quality, but the AFI B1+
map appears to have a
higher local variation.
Overall, the obtained permittivity values in the brain are underestimated as for relative permittivity values
in selected ROIs with AFI yielded 32.2 ± 0.6 for WM, 45.2 ± 1.4 for GM, and 69.5 ± 6.3 for CSF; with B1-TRAP, the values were 32.3 ± 0.4 (WM), 34.7 ± 1.0 (GM), and 62.7 ± 15.6 (CSF). The expected permittivity for WM, GM and CSF
are 52, 73 and 84, respectively6. The dictionary allowed simultaneous T2
quantification (see Figure 4), whereas T1 cannot be reliably estimated.Discussion
For
B1-TRAP, a 2D rather than a 3D approach was used to mitigate any possible
motion sensitivity. As a result, a dictionary was used to account for slice
profile effects. For the phantom, B1-TRAP yielded improved permittivity
homogeneity. For the in-vivo brain, however, although B1-TRAP visually offered
increased signal-to-noise in the B1+ map, due to the large Laplacian kernel used, both methods yield similar results and
the permittivity is generally underestimated for AFI as well as for B1-TRAP. While
B1-TRAP suffers from poor WM/GM differentiation, the higher contrast in the AFI
images results in instabilities in the reconstruction that cause areas of
noticeable inhomogeneity. In contrast to AFI, B1-TRAP offers the possibility
for simultaneous relaxation estimation from the decay of the transient SSFP
signal. The decay offered good sensitivity to T2, whereas T1 could not reliably
estimated.Conclusion
In
conclusion, we showed that B1-TRAP can be used for permittivity mapping in conjunction with T2
quantification. Paired with a noise-robust reconstruction algorithm, B1-TRAP could
be a good candidate for clinical permittivity mapping in vivo at 3 T.Acknowledgements
This work
was supported by the Swiss National Science Foundation (SNF grant No.
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