Nadège Corbin1,2 and Martina F. Callaghan1
1Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London, United Kingdom, 2Centre de Résonance Magnétique des Systèmes Biologiques, UMR 5536, CNRS/University Bordeaux, Bordeaux, France
Synopsis
Imperfect
spoiling introduces a bias in T1 times estimated with the Variable
Flip Angle approach. Correction factors accounting for B1+ inhomogeneities have been proposed but a T2 dependent bias is
expected to remain. Here we assess the amplitude of this effect at 7T with a
commonly used multi-echo protocol and multiple radiofrequency spoiling
increments and gradient spoiler moments. The T2 dependence is observed in-vivo and varies across spoiling conditions. Given that
correction schemes don’t account for T2 variability, we recommend to use the least sensitive increment, such as 117° or 144°, in
association with sufficient spoiling gradient (6π per TR).
Introduction
The
Variable Flip Angle (VFA) approach estimating the longitudinal relaxation time (T1)
assumes perfect spoiling of the transverse magnetization across TR.
Despite gradient and radiofrequency (RF) spoiling, this condition is rarely met
resulting in error in the estimated T1 times (T1app).
Given
that the error is dependent on B1+ efficiency, correction
based on a transmit field map has been proposed1. Although comparatively
small, T2 dependence is also expected in T1app.
We investigate the amplitude of the T2 dependent bias observed in T1
times estimated with the VFA approach at 7T in different spoiling
conditions.
Unlike
B1+ efficiency, a T2 map cannot be easily or
rapidly acquired preventing a correction scheme from being used. An interesting
alternative would consist of carefully choosing an RF spoiling increment that minimizes
T2 dependence. We attempt in this work to provide guidelines
regarding the choice of spoiling parameters in the Multi-parameter Mapping
protocol2 to most accurately
estimate T1 times at 7T. Methods
In-vivo acquisitions
Eight
T1app maps were acquired on one healthy volunteer on a 7T
Terra Siemens scanner with the MPM protocol using 4 RF spoiling increments (φ0),
carefully chosen for their distinct behaviour observed in simulations: 50°,
117°, 120° and 144°, and 2 spoiling gradient moments resulting in 2π and 6π
dephasing per TR. Key parameters are: multi-echo spoiled gradient echo with
TR=19.5ms, flip angles of α1=6°
and α2=26°, 6 echoes with TE
between 2.56 and 11.66ms, isotropic resolution of 1mm3.
Additionally, transmit field maps (fB1+) were acquired with the
Bloch-Siegert approach3 to compute T1app maps as follows4:
$$T_1^{app}=-\frac{TR}{ln(E_1)}\space with \space E_1=\frac{S_2-S_1.\frac{sin(α_2^c)}{sin(α_1^c)}}{S_2.cos(α_2^c)-S_1.cos(α_1^c)\frac{sin(α_2^c)}{sin(α_1^c)}}and\begin{cases}α_1^c=α_1.\frac{f_{B_1^+}}{100} \\ α_2^c=α_2.\frac{f_{B_1^+}}{100} \end{cases}\space(Eq.1)$$
Reference
T1 and T2 maps were obtained from the mono-exponential
fitting of 10 single-slice spin-echo acquisitions with and without
pre-inversion pulse respectively and variable TIs or TEs respectively. Relevant
parameters are: TR=10s, voxel size of 1.2×1.2×3.5mm3, TEs
between 29 and 129ms for the T2 measurement, TE=29ms and TIs
between 100 and 5000ms for the T1 measurement. An estimate of the apparent diffusion
coefficient (ADC) was also obtained with diffusion-weighted spin-echo EPI
acquisitions.
T1app
maps were co-registered to the reference T1 and T2
maps with SPM12.6 (https://www.fil.ion.ucl.ac.uk/spm/)
to assess the T2 dependency of T1app
in a region with comparatively homogeneous T1 (1100<T1<1350ms)
as estimated in the reference T1 map, thereby minimizing the
potential confounding factor of anatomical variability.
Numerical simulations
Numerical
simulations of the MPM protocols were performed with the Extended Phase Graph
(EPG) framework (https://sycomore.readthedocs.io/5), including
diffusion effects6, for a range of expected
T2 and T1 times and transmit field efficiency (fB1+). The diffusion coefficient
D was fixed to 0.8µm²/ms. Correction factors for imperfect spoiling were
computed from these simulations as described in1:
$$T_1=A(f_{B_1^+})+B(f_{B_1^+}).T_1^{app}\space with\begin{cases}A(f_{B_1^+})=a_2.f_{B_1^+ }^2+a_1.f_{B_1^+}+a_0\\B(f_{B_1^+})=b_2.f_{B_1^+}^2+b_1.f_{B_1^+}+b_0\end{cases}\space (Eq.2)$$
Three
sets of correction factors for each spoiling condition were computed with T2
fixed to 35, 45 and 55ms and applied to T1app maps to
correct for imperfect spoiling. Results
Reference
T2, T1 and ADC values in the region of interest were
estimated to be 47±6ms, 1260±50ms and 0.7±0.1mm2/ms
respectively.
The
T2 dependence of T1app obtained from the MPM
protocols was observed in-vivo at 7T as was the impact of the spoiling
conditions (Fig.1b,d). The T2 dependence generally followed the
predictions of numerical simulations (Fig.1a,c)).
φ0 of 50° and 120° were the most sensitive to T2
as predicted by numerical simulations (+30ms and -51ms respectively). 117° and
144° showed the smallest T2 dependence (variation smaller than 10ms).
In
line with simulations, the in-vivo T2 dependence decreased for 120°
and was negligibly impacted for 117° and 50° when increasing gradient spoiling. As
predicted, the T2 dependence of 144° was also impacted but the measured dependence
was not as low as predicted.
Difference
across T1app maps (Fig.2a) were visible and highlighted by the map
of the standard deviation (σ) across φ0 (Fig.2b). The variability across φ0 generally decreased with higher spoiling gradient.
After correction for imperfect spoiling, the
variability decreased when assuming a global T2 of 45ms in the correction
factors, and decreased even further with a T2 of 35ms. However, it
increased with correction factors assuming a T2 of 55ms. Discussion
Although
T2 shortens at 7T, and the diffusion spoiling is
increased with a multi-echo protocol, a remaining T2 dependence of
the estimated T1 times due to imperfect spoiling was observed.
Ultimately, this resulted in a dependence of the corrected T1 maps
on the choice of T2 used
to compute the correction factors.
A
T2 of 35ms reduced the variability across φ0 although the estimated T2 with a
spin-echo sequence was slightly longer. Given that only a global T2 is
used, the residual spatial T2 dependency will remain after
correction. A careful choice of the RF spoiling increment and the spoiling
gradient moment is therefore recommended to minimize the T2
dependency. Although 50° is commonly
used, 117° or 144° with relatively high spoiling gradient. would be
preferable.Conclusion
We
demonstrated the T2 dependent bias of T1 estimated with
VFA at 7T resulting from imperfect spoiling. We observed a manifestation of the
diffusion effect at 7T in-vivo with reasonable gradient amplitude and commonly
used protocols. We recommend the use of an RF spoiling increment that minimizes T2
dependency in combination with a relatively high spoiling gradient moment. Acknowledgements
The Wellcome Centre for Human
Neuroimaging is supported by core funding from the Wellcome [203147/Z/16/Z].References
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