Vladimir Juras1, Veronika Janáčová1, Pavol Szomolanyi1, Markus Schreiner2, Didier Laurent3, Celeste Scotti3, and Siegfried Trattnig1
1Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria, 2Department of Orthopedics and Trauma Surgery, Medical University of Vienna, Vienna, Austria, 3Novartis Institutes for Biomedical Research, Basel, Switzerland
Synopsis
The purpose of this study was to develop a fully automated
reproducible tool for analysis of morphological and compositional quantitative
MR parameters in well-defined cartilage sub-fields across the human knee. This
tool was deployed to proton and sodium MR images and the reproducibility was
assessed by test re-test scan of ten patients at baseline and after eight days.
Due to high reproducibility found in this study this tool may be considered as
a good alternative to manual evaluation which, as being extremely
expertise-dependent and time-consuming, could represents a considerable burden
for large clinical osteoarthritis trials.
Introduction
Osteoarthritis longitudinal studies, whether related
to the progression of the disease or the effect of new therapies, require very
precise measurements of cartilage structure and in some cases of its
composition [1]. Meanwhile new tools are also needed to meet the growing needs for
fast and reliable image analysis [2][3]. The purpose of this study was to
develop a fully automated reproducible tool for analysis of morphological and
compositional quantitative MR parameters in well-defined cartilage sub-fields across
the human knee. This tool was deployed to proton (1H) and sodium (23Na)
MR images and the reproducibility was assessed by test re-test scan of patients
at baseline and after eight days. . Materials and Methods
Ten patients with low-grade
femoral cartilage defects were included in the study and were scanned twice on
a 7T MRI scanner eight days apart. A three-dimensional double-echo steady-state
(3D-DESS) sequence with isotropic resolution (0.45mm3) was used to
acquire high-resolution MR images for automated cartilage segmentation, and T2
mapping, as a potential marker of cartilage quality, was performed using a
3D-triple-echo steady-state (3D-TESS) sequence. Sodium MR was also performed
using a double-tuned sodium/proton coil to generate morphological images necessary
for co-registration with sodium images and thus allow for assessment of
glycosaminoglycan (GAG) content in specific cartilage regions of the knee. Each
dataset was processed by MRChondralHealth software (Siemens Healthineers,
Erlangen, Germany) for automated segmentation of knee articular cartilage and
its reconstruction in 3D. Resulting segmentation files containing 21 sub-fields
determined based on anatomical landmarks that are visible on MR images but also
during arthroscopy were converted to nifty files and loaded in Matlab for
further post-processing. T2, T2* and sodium maps were co-registered with 3D-DESS
images and corresponding values were automatically extracted for each of the 21
sub-fields (Figure 1). In case of sodium, DESS images needed to be resampled
and cropped before using in MRChondralHealth. Before co-registration with
sodium images, all steps must be reverted (Figure 2). Then, a multimodal
co-registration method was applied using spatial mapping of fixed images (DESS)
and moving images (TESS). Affine transformation with 12 degrees of freedom was
used. Optimizer function parameters were determined by a previous iterative
process, while a similarity index map was used as a quantitative
co-registration quality marker. The resultant optimizer parameters were:
initial radius = 0.001; epsilon = 1.5e-4; growth factor = 1.01; and maximum
iterations = 300. Finally, the resulting transformation was applied to the
actual map. Cartilage volume, thickness, and mean T2, and sodium values were
automatically extracted for each of the 21 cartilage sub-fields. Similarly,
seven texture features were extracted from T2 maps from each sub-field using a
Gray-Level Co-Occurrence Matrix (GLCM) approach. The reproducibility of each
variable was expressed as a coefficient of variation (CV, %).Results
The mean analysis time for the 3D automated
segmentation was 8.2 ± 2.0 minutes per dataset. In most cases, small
corrections of the automated segmentation were required, most often in the
lateral posterior femur, and the lateral anterior and posterior tibia, which
took approximately 3 minutes per case.
Test re-test analysis of automated cartilage segmentation and quantitative
parameter extraction revealed excellent reproducibility for cartilage volume
(mean CV of patella was 1,7%, tibia 0.8% and femur 1.5%) and thickness determination
(mean CV of patella was 1,2%, tibia 1.7% and femur 2.4%). Similarly, T2 values
from test re-test showed mean CV of 2.3% for the patella, 3.0% for the tibia
and 1.4% for the femur. Sodium values from test re-test showed mean CV of 4.1%
for the patella, 4.6% for the tibia and 3.2% for the femur. Finally, textural
features such as homogeneity (mean CV of 1.0%), entropy (mean CV of 1.8%) and
correlation (mean CV of 2.1%) were highly reproducible, while others such as
autocorrelation (mean CV of 4.0%), contrast (mean CV of 6.8%), energy (mean CV
of 6.7%) and dissimilarity (mean CV of 4.1%) revealed larger variability.Discussion/Conclusion
This newly developed fully
automated analysis of knee articular cartilage combines quantitative
morphological and compositional information from 21 anatomically well-defined
subfields of the knee joint and provides reproducible and robust evaluation of the
cartilage volume, thickness and composition throughout the whole knee, in
particular collagen specific (T2 maps) and glycosaminoglycan specific (sodium
MRI) parameters. Therefore, this approach may be considered as a good
alternative to manual evaluation which, as being extremely expertise-dependent
and time-consuming, could represents a considerable burden for large clinical osteoarthritis
trials. MRChondralHealth can automatically segment knee cartilage from large
variety of isotropic sequences with sufficient bone/cartilage contrast and
obtained from both 7T and 3T scanners. Multi-center trials usually accommodate
protocols based on the vendor-specific sequence capabilities, therefore a
robust and protocol-independent tool is required for central-reading site. As another
advantage, this tool can be easily extended to other parametric and quantitative
MR techniques such as gagCEST or various types of T2 and T1 mapping method. Acknowledgements
This study was supported by the Austrian Science Fund, KLIF-541 B30. The financial support by the Austrian Federal Ministry for Digital and Economic Affairs and the National Foundation for Research, Technology and Development is gratefully acknowledged. References
[1] Glyn-Jones
S. et al. Osteoarthritis, The Lancet, Volume 386, Issue 9991, 25–31 July 2015,
Pages 376-387
[2]
Ambellan F., et al, Automated segmentation of knee bone and cartilage combining
statistical shape knowledge and convolutional neural networks, Medical Image
Analysis, Volume 52, February 2019, Pages 109-118
[3]
Norman B. et al. Use of 2D U-Net Convolutional Neural Networks for Automated
Cartilage and Meniscus Segmentation of Knee MR Imaging Data to Determine
Relaxometry and Morphometry, Radiology 2018; 288:177–185