Vincent Schmithorst1, Ashok Panigrahy2, and Rafael Ceschin3
1Radiology, University of Pittsburgh, Pittsburgh, PA, United States, 2University of Pittsburgh, Pittsburgh, PA, United States, 3Bioinformatics, University of Pittsburgh, Pittsburgh, PA, United States
Synopsis
Availability of clinical fMRI would be much improved
via reduction of clinical exam times. A
major factor in length of exam times is that typical MRI pulse sequences are
optimized for a single image contrast (T1, T2, FLAIR, etc.) necessitating
multiple pulse sequences each with significant “dead time” to acquire all
desired contrasts for a given protocol.
We here propose instead the time-efficient “prequence” (protocol
sequence) concept which aims at acquisition of all desired contrasts in one or
only a few sequences with minimal dead time.
Preliminary proof-of-concept is demonstrated via a simultaneous T1/T2
contrast whole-brain neuro acquisition.
Introduction
A significant barrier to more widespread clinical use
of MRI is the length of time required for a clinical MRI exam, which can range
from 30 to 60 minutes for a typical neuro exam.
Long exam times not only limit patient throughput, but also create
difficulties with patient compliance, especially in pediatric and/or
cognitively impaired populations, and repeated sedation for MRI is a
neurological risk factor1. Shortening
exam times is especially important for low-field MRI likely to become prevalent
in developing countries due to the substantially decreased cost; low-field MRI inherently
requires longer times due to the lower intrinsic SNR.
A significant factor resulting in long MRI exam times
is that typically a single pulse sequence is dedicated to each type of desired
contrast: e.g. one scan for T1 contrast, another for T2 contrast, another for SWI,
another for FLAIR, etc. Each of these
individual pulse sequences, while optimized for the desired contrast, is highly
time-inefficient as it involves “dead time” waiting for spins to acquire the
desired contrast characteristics. We
propose here the “prequence” (protocol sequence) concept whereby a single scan
or set of scans are optimized to acquire all the contrasts required for a particular
exam and demonstrate proof-of-concept via a simultaneous T1- and T2-weighted
acquisition.Methods
A two-slab sequence for simultaneous acquisition of T1
and T2 contrasts was designed as proof-of-concept (Figure 1). An FSE-like pulse train (echo spacing = 7 ms,
160 echoes) with low flip-angle refocusing followed by an RF-spoiled FLASH (TR
= 7 ms, 160 excitations) was acquired for one slab. During this time, spins from the other slab
are longitudinally relaxing after the FLASH acquisition to ensure signal for
the next FSE acquisition pulse train.
The low-angle refocusing flip angles for the FSE were optimized in order
to produce exponential-like decays for gray and white matter, with the maximum
contrast at the center of the echo train; the flip angles for the FLASH
acquisitions were optimized in order to produce the most combined (T1 and T2) gray-white
contrast at the center of ky-space, with a penalty term to minimize unwanted T1
contrast during the T2-weighted acquisition. (All optimizations were performed using
in-house routines written in IDL).
The T1/T2 prequence was implemented on a Siemens 3T Prisma
system (image resolution = 1 mm isotropic) and images were obtained from a
normal adult male volunteer. Specially
tailored RF excitation and low flip-angle refocusing high-bandwidth VERSE2
pulses were used to minimize slab boundary artifacts while not exceeding the
peak RF power available on the system.
The high bandwidth (~30 kHz) pulses used also minimize signal loss in
adjacent slabs due to MT effects and off-resonance saturation3.Results
The total acquisition time (involving full k-space
sampling) was approximately 6 minutes. SAR
deposition was approximately 50% of the limit for the subject’s height and
weight. The images display clear T1
(Figure 2) and T2 contrast (Figure 3) between gray matter, white matter, and
CSF. Slab boundary artifacts were minimal.
However, the SNR/CNR was adversely affected by the sub-optimal long T2
echo train and lack of inversion recovery contrast for the T1 echo train.Discussion
We here demonstrate proof-of-concept for the prequence
as shown by simultaneous T1 and T2 image acquisition. The actual SNR of the sequence may be significantly
improved via further optimization, as acquisition of the entire ky space in a
single pulse train of length > 1.1 s is suboptimal, and inversion pulses may
be added to improve T1 contrast. The
acquisition time for a full sampling of k-space is approximately equal to the
typical time for either a T1 MP-RAGE or T2 FSE acquisition with SENSE/GRAPPA factor
of 2. Using SENSE factor = 2, it would
therefore be possible to acquire a T1/T2 acquisition in 4X less time than using
standard clinical product sequences.
Magnetic Resonance Fingerprinting (MRF) is an
alternative approach4 which provides simultaneous T1 and T2
contrasts, synthesized from estimation of T1 and T2 parameter values. The prequence approach is not aimed at estimating
parameter value estimates, but only providing suitable contrast images for
clinical diagnoses, and we expect the fully-optimized prequence to be able to
perform this in a fraction of the time of a 3-D MRF scan. The prequence also can, if desired incorporate
a balanced steady-state free precession (bSSFP) acquisition as is done in the
MRF approach.
The prequence approach may include other contrasts
(e.g. ASL perfusion, DWI, etc.) as part of the protocol. The goal is to provide all desired contrasts
for clinical diagnoses for various protocols (e.g. headache, epilepsy, etc.) in
under 15 minutes total scanning time. A
multi-contrast EPI scanning sequence has been proposed5; however, it
suffers from insufficient resolution for many clinical applications in addition
to susceptibility artifacts. The “prequence”
approach is not exclusive to neuro exams, and other MRI exams such as musculoskeletal,
cardiac, and abdominal may also benefit from this time-saving technique.Conclusion
A multi-contrast “prequence” approach to MRI pulse
design has been proposed in order to reduce “dead time” and acquire all needed
contrasts in a reduced total exam time.
Proof of concept is demonstrated via a T1/T2 multi-contrast neuro anatomical
sequence.Acknowledgements
No acknowledgement found.References
[1] Bjur KA, Payne
ET, Nemergut ME, Hu D, Flick R. Anesthetic-related
Neurotoxicity and Neuroimaging in Children: a Call for Conversation. J Child Neurol 32(6): 594-602 (2017).
[2] Hargreaves BA, Cunningham CH, Nishimura DG, Conolly
SM. Variable-Rate Selective Excitation
for Rapid MRI Sequences. Magn Reson Med
52:590-597 (2004).
[3] Sled JG.
Modelling and interpretation of magnetization transfer imaging in the
brain. Neuroimage 182: 128-135 (2018).
[4] Ma D, Gulani V,
Seiberlich N, Liu K, Sunshine JL, Duerk JL, Griswold MA. Magnetic Resonance Fingerprinting. Nature 495(7440): 187-192 (2013).
[5] Ryu KH, Baek HJ, Skare S, Moon JI, Choi BH, Park SE,
Ha JY, Kim TB, Hwang MJ, Sprenger T.
Clinical Experience of 1-Minute Brain MRI Using a MultiContrast EPI
Sequence in a Different Scan Environment.
AJNR 4193): 424-429 (2020).