Evan Cummings1,2, Yuchi Liu2, Kathleen Ropella-Panagis2, Jesse Hamilton1,2, and Nicole Seiberlich1,2
1Biomedical Engineering, University of Michigan, Ann Arbor, MI, United States, 2Radiology, University of Michigan, Ann Arbor, MI, United States
Synopsis
This
abstract proposes a method for estimating T1, T2, and R2* values from rosette MRF
data. R2* and B0 can be extracted from a series of images generated by
subdividing the rosette data into partial readouts, and T1 and T2 are determined
using the standard MRF pattern matching pipeline. This method was tested on the
ISMRM/NIST MRI system phantom to assess the accuracy of the quantitative
relaxation measurements.
Introduction
The
rosette trajectory1 is a sampling scheme that crosses the center of
k-space multiple times during the acquisition. Recently, the rosette trajectory
has been used with cardiac MRF2,3 to enable T1 and T2 mapping with fat
or water suppression4. In addition, the multiple k=0 crossings of
the rosette trajectory have been used to create individual echo images, which
can be used to fit R2*5 and B0 values. While previous work has
investigated R2* estimation from Dixon MRF6, this work investigates
an alternate sampling method. This abstract proposes an approach for using
rosette MRF data for estimation of T1, T2, and R2* properties simultaneously.Methods
MRF data were acquired on a 1.5T
Sola (Siemens Healthineers, Erlangen, Germany) using a five-lobe rosette
trajectory. The sequence was based on the cardiac sequence described in 3 and
used the following parameters: TR = 17.4 ms, TE (start of sampling) = 1 ms,
readout duration = 15.2 ms, 768 repetitions, total scan duration = 14.7 s, flip
angles ranging between 4.5° and 15°, 192 x 192 matrix size, and 300 mm2
FOV. Inversion pulses were used with inversion times between 21 and 260 ms to
sensitize the signal to T1; T2 prep pulses were used with echo times between 40
and 80 ms. The sequence was run continuously without cardiac gating. Data were
acquired on the T2 array of the ISMRM/NIST MRI system phantom. Reference T1 and
T2 values were measured using a cardiac MRF sequence with a spiral trajectory,
and reference R2* values were measured using a series of 6 gradient echo images
with echo time of 2.38n ms for the nth image in the
series.
Quantitative tissue property maps
were reconstructed in a two-step process, shown in Figure 1. The first step of
this process is to estimate R2* and B0 values from a set of multi-echo images
collected during the rosette readout. First, the rosette trajectory was
separated into 10 half-lobes, with effective echo times of 1+3.03n ms
for a half-lobe around the nth k=0 crossing, and data from half-lobes
was reconstructed using the NUFFT7 to generate 10 images per TR. These
images were summed over all TRs to create a set of 10 composite images with different
echo times. R2* and B0 values were then fit pixelwise to these composite echo
images using a nonlinear least-squares algorithm.
The second step of this process involves
applying the MRF pattern matching algorithm to estimate T1 and T2 maps. The
reconstruction dictionary was simulated with the following tissue property
value ranges for T1 = [50:10:750 775:25:1200 1250:50:3000], T2 = [5:1:50, 55:5:200
210:10:450 475:25:700], B0 = [-15:5:15], and included corrections for slice
profile and inversion efficiency8.
To evaluate the accuracy of the T1,
T2, and R2* maps, quantitative values were determined from the mean value of a
sphere within the NIST phantom and compared to reference values. Linear
regression was performed between estimated and reference values in each case to
assess the quality of the estimation. Spheres with T2 values greater than 300
ms were excluded from analysis, as the sequence used was not designed to be sensitive
to high T2 values.Results
Reference and estimated R2* maps are shown in Figure 2, with
a regression plot and table of mean sphere values. For R2* values, the linear regression
had a slope of 1.087, and an intercept of 4.62 s-1. T1 and T2 maps,
regression plots, and mean sphere values are shown in Figure 3. For T1, the
linear regression had a slope of 0.964, and an intercept of 8.08 ms. For T2,
the linear regression had a slope of 0.828 and an intercept of 4.52 ms.Discussion
In this work, half-lobes of rosette
MRF data were separated and then combined over the acquisition to extract T2*
and B0 maps from the rosette data in addition to T1 and T2 maps. While T1 and
T2 can be determined using the traditional pattern matching MRF pipeline, R2*
is fit as an exponential function of readout time as in more traditional mapping
approaches.
For R2* values, the linear
regression slope of 1.087 indicates that the values measured show the correct
trend, although rosette MRF tends to slightly overestimate R2* values compared
to the GRE sequence. This effect increases at higher R2* values, which could
indicate that the rosette k=0 crossing points do not occur frequently enough
with this trajectory to capture rapid T2* decay effects. The regression for T1
shows that this approach offers similar values when compared to spiral MRF; T2
was underestimated as compared to the values measured with spiral MRF, as shown
in 4.
The main difference between sequences
used in previous work on rosette MRF4 and this approach is the
sampling time. A longer rosette was chosen for this work to allow for more T2*
decay to occur during the readout, theoretically allowing for more accurate
estimation of shorter R2* values. This increased scan time by approximately
70%, but this could likely be reduced depending on desired R2* accuracy and
with further research.Conclusion
R2* and B0 values can be estimated
alongside T1 and T2 values when using a rosette readout to collect MRF data. Acknowledgements
NSF/CBET 1553441, NIH/NIDDK 1R01CA208236, NIH/NHLBI R01HL094557, Siemens HealthineersReferences
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