Jeehun Kim1,2, Chaoyi Zhang3, Mingrui Yang1, Hongyu Li3, Mei Li1, Richard Lartey1, Leslie Ying3,4, and Xiaojuan Li1
1Department of Biomedical Engineering, Program of Advanced Musculoskeletal Imaging (PAMI), Cleveland Clinic, Cleveland, OH, United States, 2Department of Electrical Engineering, Case Western Reserve University, Cleveland, OH, United States, 3Electrical Engineering, University at Buffalo, State University of New York, Buffalo, NY, United States, 4Biomedical Engineering, University at Buffalo, State University of New York, Buffalo, NY, United States
Synopsis
The T1ρ imaging is a promising
biomarker for early diagnosis of osteoarthritis, but the application of the
method is hindered by its long scan time. In this work, a novel compressed
sensing algorithm based on kernel-based low-rank was proposed. The algorithm was
evaluated with numerical simulation and volunteer scans, where the volunteers
with and without osteoarthritis was scanned with prospective downsampling to
evaluate the algorithm performance regarding the presence of pathology.
Introduction
MRI T1ρ relaxation times have been
suggested as promising imaging biomarkers for detecting early osteoarthritis
(OA).1,2 However, the prolonged scan time to acquire multiple
echoes for T1ρ mapping remains a challenge for its clinical
applications. To solve this problem, compressed sensing techniques have been
proposed to accelerate T1ρ imaging.3 Despite
promising results, previous studies in the literature were primarily limited to
retrospective downsampling and limited to healthy volunteers. In this study, we
developed a novel fast T1ρ imaging using kernel-based low-rank
compressed sensing reconstruction. Numerical simulations were performed to
evaluate the algorithm including performances with different SNRs. Subjects
with and without clinically diagnosed osteoarthritis were scanned with
prospective downsampling to evaluate whether the presence of pathology will
degrade the algorithm performance.Methods
Compressed Sensing Algorithm: The underlying relationship
between echo images can be mainly expressed as exponential decay, with
additional factors such as noise and motion effect. To solve this complicated
relationship, we used the kernel-based low-rank (KLR) method to reconstruct the
images. Specifically, temporal bases were learned from low-resolution images
obtained from a fully sampled center k-space of each echo. These temporal bases
can represent not only the exponential model but also the noise and motion
effects. Then an optimization problem was formulated by adding temporal bases
as a constraint along with a data fidelity term, which can be solved by an
iterative algorithm. The details of the KLR method can be found in (4).
Numerical Simulation: Numerical phantom was generated to
match the scan parameters from volunteer scans. The form of the phantom is
shown in Figure 1.
Acceleration factor (AF) of 8 was used for the reconstruction. With the
reference T1ρ map, 8 echo images were generated
with 4 levels of complex noise added to the image to evaluate the performance regarding
signal to noise ratio (SNR). The standard deviation of 1/100, 1/75,
1/50, 1/25 was used with the first echo signal intensity of 1.
Volunteer Scan: Volunteer scans were performed with a 3T MR scanner
(Magnetom Prisma, Siemens Healthcare AG, Erlangen, Germany) with a 1Tx/15Rx
knee coil (QED). Eight echo 3D magnetization-prepared angle-modulated partitioned
k-space spoiled gradient-echo snapshots (MAPSS) T1ρ
mapping sequence5,6 was accelerated with three AFs (4, 6, and 8),
along with a reference scan (parallel imaging reconstruction, Phase GRAPPA=2). Dual-echo
steady-state (DESS) was also collected for automatic cartilage segmentation. Specific
scan parameters are listed in Table 1.
A total of nine volunteers were scanned, three with diagnosed OA. Scan/rescan
with repositioning between scans was performed for repeatability evaluation. Total
six compartments were automatically segmented using an in-house developed deep
learning model, and the compartments included medial/lateral femur (MFC/LFC),
medial/lateral tibial (MT/LT), trochlear (TRO), and patella (PAT). Coefficients
of variation (CVs) and intraclass correlation coefficients (ICCs) were
calculated using the mean values of each compartment between accelerated and
reference measures. Bland-Altman plot was used to visualize the agreement. CVs
of repeated scans were also calculated for each AF.Results
Figure 2
shows the numerical simulation result of the reconstruction algorithm. As shown
in CVs and ICCs in Figure 2-b,
the difference increases with a decrease of SNR, but the difference stayed
within 3.5% CV.
Figure 3-a shows the table of CVs and ICCs for
evaluation. Volunteer scan also showed CVs smaller than 3.5%, comparable to
numerical simulation. Scan/rescan CVs were also showed good repeatability,
close to that of the reference scan, which was 1.71% without pathology
and 2.88% with pathology. It is worth
noting that these results did not show noticeable degradation with pathology. Figure 3-b
shows the Bland-Altman plot of the
three AFs. For all acceleration factors, a good correlation was observed
between the accelerated and reference T1ρ
values.
Figure 4
shows sample images of reference and accelerated T1ρ map.
As can be seen from the magnified map on the right, fine details of the
reference maps were well preserved with all accelerated maps.Discussion
The numerical simulation result showed that the algorithm
could reconstruct the original T1ρ map with a small error with
CV<3.5% with first echo SNR>25. In human subjects, the proposed
reconstruction algorithm showed a very promising result in terms of scan/rescan
repeatability (CV<3.34%), which was comparable to the reference imaging
method. It also yielded T1ρ values close to the reference,
showing CV < 3.39%. One important finding from the results was that the
reconstruction produced comparable results regardless of pathology, with no
significant difference between subjects with and without pathology in terms of
CVs for all acceleration factors. This implies that the reconstruction
algorithm is a reliable method that could be used for fast T1ρ quantification.Conclusion
The proposed compressed sensing algorithm showed promising
results for the clinical application of T1ρ
mapping with a significantly reduced scan time of under 4 minutes.Acknowledgements
The study was supported by NIH/NIAMS R01
AR077452.References
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