Giske Opheim1, Vincent O. Boer2, Esben Thade Petersen2,3, Martin Prener1, Olaf B. Paulson1,4, and Jan Ole Pedersen5
1Neurobiology Research Unit, Dept. of Neurology, Copenhagen University Hospital Rigshospitalet, Copenhagen, Denmark, 2Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Hvidovre, Denmark, 3Section for Magnetic Resonance, DTU Health Tech, Technical University of Denmark, Kgs. Lyngby, Denmark, 4Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark, 5Philips Healhtcare, Copenhagen, Denmark
Synopsis
7T MRI has several cases
of demonstrated clinical yield, but is challenged by spatial B1 inhomogeneity.
Bias fields in structural images may be acceptable for visual and computational
analysis, and can to some extent be accounted for by bias-field corrections. However, this is significantly complicated since the characteristics of the bias field often varies
between patients. By analyzing stability of bias fields in 3D MPRAGE images, we
compared two dielectric pad setups and the impact of 3D-based B1+
scaling, i.e., optimization of the RF gain. We found increased stability by
using large pads and 3D-based B1+ scaling in combination.
Introduction
MRI at 7T is a
promising neuroimaging tool with great potential clinical yield, e.g., in
detection and delineation of brain lesions [1]. By the virtue of
submillimeter spatial resolution, increased susceptibility contrast and SNR,
standard structural sequences and contrast weightings may provide increased
sensitivity during both visual inspection and computational methods. But 7T MRI
is also challenged by increased B1+-induced spatial inhomogeneity [1,2],
and 2D-based RF gain optimization may not be adequate for dealing with the
large B1 field inhomogeneity variations encountered at ultra-high field.
Sub-optimal RF gain optimization may cause additional B1+
inhomogeneity, which may hamper visual inspection, and even after bias-field
correction leave images unusable for computational analyses. Some sequences,
e.g., MP2RAGE [2], were developed specifically to mitigate these B1-induced
image variations. However, such sequences may have other shortcomings, e.g.,
prolonged scan time, not being automatically reconstructed at the scanner, or a
different contrast than what a dedicated neuroradiologist at the local center
prefers. It is therefore desirable to seek out stable solutions to this
commonly encountered issue at 7T MRI with a classical setup. A simple and widely used method is to
apply dielectric pads on each side of the head. But even with these, the
spatial dependency of the B1+-field may induce signal
dropout in mesial or lateral brain regions (figure 1), which may prevent
optimal conditions for inspection or analyses. Such signal dropout and
inhomogeneity may further vary with head size, positioning, image contrast and sequence
type, and leaves clinicians and
researchers with a highly varying image quality. We investigated the effects of
combined use of large bilateral dielectric pads and 3D-based RF gain
optimization on the stability of bias fields in 3D MPRAGE images. To compare
across cohorts, we used the coefficient of variation of the computed bias field
generated in post-processing of 3D MPRAGE scans.Methods
Informed consent was obtained according to local ethical guidelines, in
relation to a larger scan protocol. 3D MPRAGE images (0.7 mm isotropic) were
acquired on an actively shielded 7T MR system (Philips, Achieva, Best, The
Netherlands), with a quadrature 32/2 Rx/Tx coil (Nova Medical, Wilmington, MA),
and dielectric pads on both sides of the head.
Ninety-five subjects were included, and divided into three groups: Group 1
(n=48) with smaller dielectric pads and 2D-based RF gain optimization, group 2
(n=29) with renewed, larger pads (19x19 cm, Multiwave Imaging, Marseille,
France) and 2D-based RF gain optimization, and group 3 (n=18) with the renewed
pads and 3D-based RF gain optimization. This was done by including a DREAM
sequence to map the B1+ field (3.5mm x 3.5mm in-plane resolution, 36 slices,
FOV: 240 mm x 180 mm x 240 mm, STEAM preparation flip angle: 35 deg.). In
general, we observed ~40% variation in the B1+-maps, and
a tendency of the RF gain to be overestimated (see figure 1). To counter-act
this, we implemented an automated adjustment of the RF gain, based on the
acquired DREAM map: After light smoothing and masking, the maximum B1+-intensity
was identified and used for setting the RF gain. Bias fields were computed with
bias-field correction of all MPRAGE images with step-size 3, FWHM 60 mm and
light regularization (0.001) in SPM12. Subsequently, we computed a coefficient
of variation (CV), defined as
the ratio of the standard deviation to the mean of the bias-field intensity per axial
slice inside a brainmask. We used ANOVA test to compare the per-subject average
of CV (|CV|) between the three groups.Results
As demonstrated in
figure 2, there was a larger spread of CV across subjects in group 1, compared to group 2 and 3. There was a
slight trend in increased spread of CV values in group 2 compared to group 3. Boxplots
on figure 3 shows the distributions of |CV| in the three groups. ANOVA test revealed
significant differences (p=1.7307e-21). This was largely driven by the
variation in group 1, albeit group 2 and 3 was also found to be significantly
different (p= 0.0387). Discussion
By comparing CV across groups in our study, we saw significant
differences between different approaches for minimizing B1-induced bias fields.
The combination of large pads and 3D-based RF gain optimization (group 3)
yielded the smallest |CV|-variation, indicating increased stability in the bias
field and thereby B1+. However, this is a quantitative
and indirect measure of the quality-parameter “stability”, and thus may not be
translatable to all subjects, nor in all contrast weightings. While we analyzed
3D MPRAGE, other sequences, e.g., 3D FLAIR, are even more vulnerable to B1+-induced
variations, and would likely show larger effects. In our experience, the apparent
quality improvement observed here are likewise seen for other sequences during
radiological evaluation, and the implementation of the 3D-based RF gain
optimization have completely mitigated cases of severe signal dropout in mesial
brain regions across sequences. Conclusions
When performing
structural neuroimaging at 7T with a classical coil setup and transmit mode
(i.e., low RF transmit channel count), we recommend using a combination of
large dielectric pads on each side of the head along with 3D-based RF gain
optimizationAcknowledgements
The project is
supported by the Independent Research Fund Denmark. The 7T scanner was donated by
the John and Birthe Meyer Foundation and The Danish Agency for Science,
Technology and Innovation (grant no. 0601-01370B).References
[1] Trattnig,
S. et al. (2018). Key clinical benefits of neuroimaging at 7 T.
Neuroimage, 168, 477-489.
[2] Marques,
J. P. et al. (2010). MP2RAGE, a self bias-field corrected sequence for
improved segmentation and T1-mapping at high field. Neuroimage, 49(2),
1271-1281.