Anuj Sharma1, Samir D Sharma1, and Andrew J Wheaton1
1Magnetic Resonance, Canon Medical Research USA, Inc., Mayfield Village, OH, United States
Synopsis
Retrospective
rigid-body motion correction methods often alternate between updating the
estimate of the motion parameters and updating the image. The alternating
minimization reconstruction is time-consuming, which is problematic in the
clinical setting. We propose a new method for retrospective rigid-body motion
correction that makes use of the insight that many shots of the imaging data
have similar motion values, and therefore a reference image can be created from
the imaging data itself. By leveraging this insight, this method is able to
quickly reconstruct motion-corrected images without requiring large amounts of
ML training data and without requiring an additional scout scan.
Introduction
Retrospective rigid-body motion correction methods aim to reconstruct
an image without motion artifacts from data that were acquired during patient
motion. These techniques often alternate between updating the motion parameters
and updating the image using the model that is presented in Equation 1, where x
is the motion-free image, T is a matrix of motion parameters for each shot, S denotes
the coil sensitivity maps, F is the Fourier transform, and A is a matrix that
selects the acquired k-space samples for each shot1.
k = AFSTx + N(0,σ2) [Eq. 1]
The alternating minimization reconstruction is time-consuming. This is
especially problematic in the clinical setting.
The NAMER method has demonstrated a reduction in reconstruction time2.
NAMER uses a CNN to remove motion artifacts from the image estimate at each
alternating minimization iteration. Haskell et al. demonstrated that using the
CNN reduces the reconstruction time by allowing faster convergence of the
estimates of the motion parameters. However, the CNN requires large amount of
training data in order to perform robustly across different types of motion
parameters.
The SAME method3 was recently developed to also reduce
reconstruction time for retrospective rigid-body motion correction. SAME
acquires a reference scout image for the estimation of the motion parameters. A
benefit of SAME is that alternating minimizations are not necessary because the
reference image is formed from the scout scan. However, SAME increases total
scan time because a scout image must be acquired. Further, the scout image must
be motion-free.
We propose a new method termed incremental
motion correction (iMoCo) for retrospective rigid-body motion correction. iMoCo
makes use of the insight that many shots of the imaging data have similar
motion, and therefore a reference image can be created from a subset of the
imaging data itself. By leveraging this insight, iMoCo is able to quickly
reconstruct motion-corrected images without requiring large amounts of data for
ML training and without requiring an additional scout scan. We demonstrate the
performance of iMoCo using both simulated and acquired motion-corrupted images.Methods
Figure
1 demonstrates the iMoCo method for a 2D FSE FLAIR acquisition with six shots.
An initial reference image is formed from a subset of the shots that have
similar motion values. Subsequently, motion estimation for the remaining shots
is performed sequentially using the reference image. For example, for a six
shot FLAIR acquisition, an initial reference image is created using data from
three shots that have similar motion values. Then, the motion values for the
fourth shot are estimated, and the reference image is updated to include data
from this motion-corrected shot. This cycle repeats until motion for all shots
has been estimated, and the motion-corrected shot data are used to improve the
reference image estimate.
To
demonstrate this method, data were acquired on a Vantage Galan 3T MR system
(Canon Medical Systems Corporation, Nasu, Japan) using a 16-channel head coil.
FLAIR acquisition parameters included: FOV=24x24cm2,
matrix size=288x256, slice thickness=4mm, TR/TE/TI=11000/120/2850ms, ETL=29, 6 shots.
Both motion-free and motion-corrupted datasets were acquired. The motion-free
dataset was acquired to retrospectively study the performance of iMoCo. The
motion-corrupted dataset was acquired to prospectively assess the performance
of iMoCo. The subject was asked to rotate their head once about the head-foot
axis during the scan.
Simulated
motion was added to the motion-free dataset using the model presented in
Equation 1. Translation and rotational motion were added to two shots of the
six-shot dataset. The synthesized motion-corrupted dataset was reconstructed
using the joint motion correction1 and using iMoCo. The acquired
motion-corrupted dataset was reconstructed using joint motion correction and
using iMoCo. A multi-resolution reconstruction strategy was used in both joint
correction and iMoCo1. Shots for the initial reference image were
selected by performing an initial low-resolution estimate of the motion values.
Offline reconstruction was done in Matlab on a computer with Intel i7 processor
at 2.4 GHz using 8 GB RAM. Reconstruction time was calculated using ‘tic’ and
‘toc’ commands in Matlab.Results
Figure
2 shows the results of the joint motion correction and the incremental motion
correction (iMoCo) for the synthesized motion-corrupted dataset. Using joint
correction, motion artifacts remained after 80 iterations of the alternating
minimization (white arrows). Using iMoCo, the motion-free image is recovered.
Figure 3 shows the results of the joint motion correction and the incremental
motion correction (iMoCo) for three slices of the acquired motion-corrupted
dataset. Using joint correction, 5-10 alternating minimization iterations were
needed to recover the motion-free image. The total reconstruction time was
between 110-175 seconds for each slice. For iMoCo, the motion-free image was recovered.
The total reconstruction time was between 60-70 seconds for each slice.Discussion
iMoCo
is a new method that reduces the reconstruction time for retrospective
rigid-body motion correction. We have demonstrated that iMoCo reduces the
reconstruction time by about a factor of 2 while still recovering
motion-corrected images. iMoCo uses a subset of the imaging data itself to
generate a reference image. Therefore, iMoCo does not require training data and
it does not require a separate scout scan. Future work may involve
parallelizing the motion estimation of each shot to further reduce
reconstruction time.Acknowledgements
No acknowledgement found.References
1. Cordero-Grande L, Teixeira R, Hughes EJ et al. Sensitivity
encoding for aligned multishot magnetic resonance reconstruction. IEEE Trans
Comput Imaging. 2016;2:266–280.
2. Haskell MW, Cauley SF, Bilgic B, et al. Network
accelerated motion estimation and reduction (NAMER): convolutional neural
network guided retrospective motion correction using a separable motion model. Magn
Reson Med. 2019;82:1452-1461.
3. Polak D, Cauley S, Bilgic B, et al. Scout
acquisition enables rapid motion estimation (SAME) for retrospective motion
mitigation. ISMRM virtual conference and exhibition 2020, p. 0463.