Mert Şişman1, Mehdi Sadighi1, and B. Murat Eyüboğlu1
1Electrical and Electronics Engineering, Middle East Technical University (METU), Ankara, Turkey
Synopsis
Recently,
it is shown that the magnetohydrodynamic (MHD) flow has potential in clinical
applications. In addition, diffusion tensor imaging (DTI) is widely used as an
exclusive clinical diagnostic method. To obtain the MHD flow velocity
distributions in three directions, twelve acquisitions with flow-encoding
gradients and external current injection are needed. By choosing flow-encoding
directions carefully, it is possible to obtain MHD flow velocity and DT
distributions from the MR phase and magnitude images of the same acquisition.
In this study, the MHD flow and DT data of an imaging phantom are acquired simultaneously
using a spin echo based pulse sequence.
INTRODUCTION
MHD flow is a phenomenon that emerges inside the
conductive fluids due to the orthogonal magnetic field and electrical current
density distributions. For instance, during Magnetic Resonance Current Density Imaging
(MRCDI), an external current is injected into the medium.1 The current density
creates a Lorentz force density distribution by interacting with the static
magnetic field of the MR scanner ($$$B_0$$$). As a result, fluid flow is introduced in
compliance with the Navier-Stokes equations called MHD flow.2 Furthermore, MHD is
a well-known effect observed during an electrocardiogram (ECG) triggered MRI
scans and has been reported to interfere with the measured ECG signal.3,4 Consequently, MHD
flow velocimetry is a novel and clinically important research problem. There
are several studies that propose spin echo (SE) or gradient echo (GE) based
pulse sequences with flow-encoding gradients to obtain MHD flow.5-8 In these studies, the
flow-encoding gradients are applied in one of the orthogonal directions (x-,
y-, or z-) to measure the flow in that direction by encoding it into the MR
signal phase. However, this choice of flow-encoding directions is not obligatory.
With a different set of flow-encoding directions, the associated MR magnitude
images can be utilized to obtain the diffusion tensor $$$\overline{\overline{D}}$$$) of the medium.
To obtain MHD flow velocity in three directions, twelve
acquisitions in the presence of flow-encoding gradients and current injection must
be conducted. The weighted average of four phase images having flow encoding in
a specific direction gives the MHD flow in that direction. With the proposed set
of the flow-encoding directions, it is also possible to extract $$$\overline{\overline{D}}$$$ from the associated
MR magnitude images provided that at least one T2-weighted image is acquired from the same region.
In this study, MHD flow and $$$\overline{\overline{D}}$$$ distributions
obtained from the same measurements are demonstrated.METHODS
The
MR phase component formed due to MHD flow ($$$\phi_{MHD_{\mathbf{G_f}}}$$$) can be obtained as7:
$$\phi_{MHD_{\mathbf{G_f}}}=\frac{arg(S^{I_+\mathbf{G_f}_+})-arg(S^{I_-\mathbf{G_f}_+})-arg(S^{I_+\mathbf{G_f}_-})+arg(S^{I_-\mathbf{G_f}_-})}{4}\quad\quad\quad\quad\quad(1)$$
$$$S^{I_\pm\mathbf{G_f}_\pm}$$$ are the MR
signal distributions with opposing flow-encoding gradients ($$$\mathbf{G_f}$$$) and injected
current ($$$I$$$) polarities.
The
relation between $$$\phi_{MHD_{\mathbf{G_f}}}$$$,
the MHD flow velocity distribution ($$$\mathbf{v}$$$)
and $$$\mathbf{G_f}$$$ can be formed as:
$$\phi_{MHD_{\mathbf{G_f}}}=-\int_{t_0}^{t_0+\delta}\gamma(\mathbf{G_f}\cdot\mathbf{v})dt+\int_{t_0+\Delta}^{t_0+\Delta+\delta}\gamma(\mathbf{G_f}\cdot\mathbf{v})dt=\gamma\delta\Delta(\mathbf{G_f}\cdot\mathbf{v})\quad\quad\quad\quad\quad(2)$$
where
$$$\delta$$$ is the flow-encoding gradient duration, and $$$\Delta$$$ is the time interval between the starting
points of two consecutive flow-encoding gradients. Hence, using the relation
constructed in Equation 2, $$$\mathbf{G_f}$$$ can be used to compute $$$\mathbf{v}$$$ in the direction of $$$\mathbf{G_f}$$$.
If the flow encoding gradient vector directions are chosen carefully, with twelve measurements (6
with positive current polarity and 6 with the negative), both $$$\overline{\overline{D}}$$$, and MHD related phase distribution ($$$\phi_{MHD_{\mathbf{G_f}}}$$$)
can be obtained separately. The conventional
flow-encoding gradient set ($$$\mathbf{G_f^k}$$$) utilized in MHD measurements can be shown as7,8:
$$\mathbf{G_f^1}=\begin{bmatrix}G_f\\0\\0\end{bmatrix},\mathbf{G_f^2}=\begin{bmatrix}-G_f\\0\\0\end{bmatrix},\mathbf{G_f^3}=\begin{bmatrix}0\\G_f\\0\end{bmatrix},\mathbf{G_f^4}=\begin{bmatrix}0\\-G_f\\0\end{bmatrix},\mathbf{G_f^5}=\begin{bmatrix}0\\0\\G_f\end{bmatrix},\mathbf{G_f^6}=\begin{bmatrix}0\\0\\-G_f\end{bmatrix}\quad\quad\quad\quad\quad(3)$$
On the other hand, the proposed set ($$$\mathbf{{G_f^k}^*}$$$) is given in
Equation 4:
$$\mathbf{{G_f^1}^*}=\begin{bmatrix}G_f\\0\\G_f\end{bmatrix},\mathbf{{G_f^2}^*}=\begin{bmatrix}-G_f\\0\\G_f\end{bmatrix},\mathbf{{G_f^3}^*}=\begin{bmatrix}G_f\\G_f\\0\end{bmatrix},\mathbf{{G_f^4}^*}=\begin{bmatrix}G_f\\-G_f\\0\end{bmatrix},\mathbf{{G_f^5}^*}=\begin{bmatrix}0\\G_f\\G_f\end{bmatrix},\mathbf{{G_f^6}^*}=\begin{bmatrix}0\\G_f\\-G_f\end{bmatrix}\quad\quad\quad\quad\quad(4)$$
The main point here is that $$$\overline{\overline{D}}$$$ cannot be
reconstructed with the set in Equation 3 since the linear system of equations
with unknown diffusion coefficients becomes linearly dependent. However, the
set in Equation 4 is suitable for the reconstruction of $$$\overline{\overline{D}}$$$.9
To solve for $$$\phi_{MHD_{\mathbf{G_f}}}$$$, the data acquisition is needed to be repeated twice
with opposing current injection polarities. Hence, $$$\overline{\overline{D}}$$$ can be
reconstructed twice with these two data sets and two additional measurements
without flow-encoding gradients but with current injections. Reconstructing the
same diffusion tensor twice can be exploited to enhance SNR by a factor of $$$\sqrt2$$$.
To show the numerical similarity between the MHD flow
velocity distributions ($$$\mathbf{v}_\mathbf{{G_f^k}}$$$ and $$$\mathbf{v}_\mathbf{{G_f^k}^*}$$$) obtained with the sets $$$\mathbf{{G_f^k}}$$$ and $$$\mathbf{{G_f^k}^*}$$$,
Root Mean Square Error between the two images is computed as:
$$RMSE(\%)=\sqrt{\frac{1}{N}\sum_{j=1}^n(\mathbf{v}_\mathbf{{G_f^k}}-\mathbf{v}_\mathbf{{G_f^k}^*})^2}\times100\quad\quad\quad\quad\quad(5)$$
where $$$N$$$ is the total number of image pixels.RESULTS
The
phantom experiments are performed using a 3T MRI scanner (MAGNETOM Trio,
Siemens AG, Erlangen, Germany) with the SE-based pulse sequence in Figure 1(a).
The sequence parameters are given in Figure 1(b). The experimental phantom is
shown in Figure 2.
The
MHD flow velocity distributions obtained simultaneously with $$$\overline{\overline{D}}$$$ are shown in
Figures 3 and 4 for vertical and horizontal current injection profiles,
respectively. Furthermore, the corresponding $$$\overline{\overline{D}}$$$ distributions also
demonstrated in Figure 5.DISCUSSION and CONCLUSION
In Figures 3 and 4, it is seen that MHD flow
velocity distributions can be obtained with the proposed flow-encoding
direction set with almost the same accuracy as the results obtained using the
conventional set. Similarity of the images can be observed perceptually and $$$RMSE(\%)$$$ values
supports this observation.
Moreover, $$$\overline{\overline{D}}$$$ distribution is
obtained using the data sets with and without current injection. The similarity between the results of the two cases shows that the current
injection does not affect magnitude images as expected. Moreover, the results
obtained with the current injection case have $$$\sqrt2$$$ SNR advantage
since the data collection procedure is repeated twice with opposing current
polarities.
One important observation is that the maximum values
of the velocity distributions in Figure 3 are almost four times larger than those
in Figure 4, although the injected current pulses for two cases have the same
magnitude and duration. It is anticipated that this is the result of the
positioning of the biological inhomogeneities. Hence, the flow dynamics in two
different current injection cases get affected differently. This effect will be
investigated in future studies.Acknowledgements
This work is a part of the M.Sc. thesis study of
Mert Şişman. B. Murat Eyüboğlu is the thesis supervisor. Mehdi Sadighi is a
graduate student under the supervision of B. Murat Eyüboğlu.
Experimental data were acquired using facilities of
UMRAM (National Magnetic Resonance Research Center), Bilkent University,
Ankara, Turkey.
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