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Assessing breast density using the standardized proton density fat fraction based on chemical shift encoding-based water-fat separation 
Tabea Borde1, Mingming Wu1, Stefan Ruschke1, Christof Böhm1, Kilian Weiss2, Stephan Metz1, Marcus R Makowski1, and Dimitrios Karampinos1
1Department of Diagnostic and Interventional Radiology, Technical University of Munich, Munich, Germany, 2Philips Healthcare, Hamburg, Germany

Synopsis

Breast density is confirmed as a strong, independent risk factor of breast cancer which is why there is a clinical need for a robust, reader-independent, non-ionizing, quantitative assessment of breast density. This retrospective study proposes the proton density fat fraction (PDFF) derived from chemical shift encoding-based water-fat separation as a novel quantitative MRI biomarker of breast density. As a clinically highly practicable biomarker that is automatedly obtainable and insensitive to acquisition parameters and the partial volume effect, the PDFF significantly negatively correlated with the most commonly used conventional radiographic mammogram breast density estimations.

Purpose

Breast cancer is the leading cause of cancer related deaths among women worldwide with almost 650.000 deceases per year (1). In both screen-detected and symptomatic patients, high breast density, as a measure of fibroglandular parenchyma relative to adipose tissue, has been identified as one of the strongest independent risk factors for the development of breast cancer and is associated with a twofold increase in breast cancer incidence rates (2-4). In clinical practice, the breast density is assessed in conventional radiographic mammograms whose accuracy is limited by a great intra- and inter-reader variability and a small calibration margin (5, 6). Therefore, a reader-independent, non-ionizing, quantitative assessment of breast density is desirable. MRI presents a suitable alternative for an objective, volumetric quantification of the structural composition of the breast without the use of ionizing radiation. Previous MRI techniques have primarily employed thresholding analysis of T1-weighted imaging and water-fat separated Dixon images (7-9). The water-fat MRI-based proton density fat fraction (PDFF) defined as the ratio of density of triglyceride protons to the total density of triglyceride and water protons is a comprehensive and clinically highly practical biomarker for the tissue fat concentration (10-12). The present study aims to investigate PDFF as a quantitative biomarker for fat tissue concentration in breast MRI and correlate its performance to mammography as the most widely used breast density measurement in the clinical setting.

Methods

In this retrospective study, 193 pre- and postmenopausal women with a reported benign mammography screening within the last 15 months were subjected to 3T MRI (Philips Ingenia, Best, The Netherlands) from August to November 2020. MRI included a 6-echo chemical shift encoding-based water-fat imaging sequence with the following parameters: bipolar readout, 1.7mm isotropic acquisition voxel size, FOV(mm):AP=220,RL=440,FH=190, C-SENSE factor 3, TR/TE/deltaTE = 8.8/1.43/1.1, flip angle = 3°, acquisition time: 2:11 min. Water-fat separation was performed online using the water-fat separation algorithm of the vendor, after phase error correction. Water-fat separation was performed based on a signal model accounting for a single T2* decay and a pre-calibrated 7-peak fat spectrum accounting for the presence of multiple peaks in the fat spectrum. Resulting volumetric fat-only, water-only images and PDFF maps (reflecting the fat signal percentage in each voxel) were generated (Figure 1) (10). A semi-automated breast segmentation was performed by manually delineating the border between the pectoralis muscle and the breast parenchyma on every second slice in fat-only images with ITK-SNAP (13). Using k-means clustering, the FOV was divided into water, fat and background signal. The manually selected borders where connected with a dilation step and the centroids of the left and right breast were calculated by projecting the manual delineation in AP orientation. Both the centroid position and the border delineation helped separating the breast from the thorax using bwselect from the Image processing toolbox (MATLAB R2020b, The MathWorks) (Figure 2). Finally, the mean PDFF values of the isolated breasts were automatically extracted.The mammographic breast density was classified by visual estimation of two independent radiological readers with 4 and 1 years of experience in mammography using the American College of Radiology Breast Imaging Reporting and Data System categories 1-4 (14). Spearman correlation was used between PDFF and mammographic categories. To evaluate their congruity, the Kruskal-Wallis test was performed followed by the Bonferroni Holm correction criteria due to their non-gaussian distribution. Statistical analyses were performed using R (R Foundation for Statistical Computing, 1.3.1056, 2020).

Results

The inter-reader reliability in mammographic breast density estimations was 0.7. Good quality PDFF maps were obtained in 138 women, excluding images with artefacts due to a failing phase error correction or an incorrect selection of the center frequency in patients with silicone implants (Table 1). There was no difference between right and left breast (p = 0.94). The PDFF strongly, negatively correlated with the mammographic breast density measurements (Spearman rho: -0.74, p < 0.0001) and revealed a significant distinction between all four categories following the Bonferroni Holm correction (Figure 3).

Discussion

Previous works for assessing breast density with MRI have relied on thresholding of T1-weighted and Dixon images, which is limited by partial volume effects. In a recent publication, Ding et al. employed a Dixon acquisition using a GRASE sequence which required additional calibrations to remove T1 and T2 weighting effects (15). The present work uses a low flip angle gradient echo sequence for mapping the PDFF, which is independent of the underlying relaxation properties and has been validated in other organs. Furthermore, the PDFF overcomes the 2D projection limitations of conventional mammography. The improved concordance of the poor reader reproducibility (6) and the simple integration of breast density measurements derived from the PDFF may provide clinicians with a valuable tool for an accurate cancer risk prediction and reliable evaluation of longitudinal changes in breast density.

Conclusion

The proposed PDFF could be considered for an automated, reproducible tissue fat concentration measurement that is directly comparable with mammographic breast density estimations and therefore a promising approach to an accurate, user-independent and non-ionizing breast density assessment.

Acknowledgements

The present work was in part supported by Philips Healthcare.

References

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Figures

Figure 1: Segmentation workflow. (A) Axial MRI fat-separated image. (B) Axial MRI water-separated image. (C) PDFF map. (D-F) Fat, water and foreground mask as a result of k-means clustering. (G) Manual segmentation delineating the border between the pectoralis muscle and breast parenchyma. (H) Automated completion of segmentation masks. (I) Final automated separation of the left breast.

Figure 2: Mammograms with breast density estimation following the American College of Radiology Breast Imaging Reporting and Data System categories 1-4 with corresponding PDFF maps.

Figure 3: Correlation of mean PDFF values to the four American College of Radiology Breast Imaging Reporting and Data System categories with adjusted p-values revealing a significant inverse correlation.

Table 1: Patient and tumor characteristics. ACR American College of Radiology categories PDFF proton density fat fraction SD standard deviation. Gene mutation included known BRCA, ATM, FANCM, CHEK2 mutations.

Proc. Intl. Soc. Mag. Reson. Med. 29 (2021)
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