Synopsis
Motion in parallel-transmit (pTx) causes flip-angle error due to dependence of channels' B1-sensitivities on head position. Real-time
pTx pulse-design could mitigate motion-induced flip-angle error, but requires real-time, motion-resolved B1+
distributions (not measurable). A deep learning method is presented to estimate motion-resolved
B1+ maps via a system of conditional generative adversarial networks.
Using simulations, we demonstrate that estimated maps can be used to design tailored pTx
pulses which yield similar flip-angle profiles to those without motion, reducing maximum observed flip-angle error from 79% to 25%. Importantly,
networks can be run sequentially to accurately predict B1+ for
arbitrary displacements incorporating multiple directions.
Introduction
Parallel-transmission
(pTx) of pulses can overcome B1 nonuniformity at 7T1-3, however individual
channels’ fields and interference patterns depend on the coil load (position,
composition, geometry)4-5. As a result, flip-angle and specific
absorption rate (SAR) distributions are sensitive to motion in pTx, leading to
image quality and safety concerns6-9. Retrospective motion
correction is therefore inadequate. Conservatively-bounded SAR estimates are
used, but prevent optimal imaging performance3,10.
Real-time
pTx pulse-design is a feasible solution11-12, but requires real-time
B1+ distributions (not measurable).
Data
not directly measurable by MR (eg. tissue conductivity) can be predicted by
conditional generative adversarial networks (cGANs), given some MR-accessible
data as input13-15. Neural networks have been used to predict
(non-pTx) B1+ from localizers at 7T
for slice-dependent pulse scaling to reduce SAR, however prediction quality was
head position dependent16.
Here, we use simulations
and train cGANs to predict pTx B1+ distributions (henceforth
B1-maps) following head motion, given one initial B1-map. If used with motion
detection17-18, this permits motion-resolved B1-estimation (and therefore
real-time pulse re-design). Flip-angle and SAR distributions of (SAR-unconstrained)
pTx pulses designed using network-predicted B1-maps are compared to those using
the conventional approach of designing pulses from the initial B1-map alone.
Methods
Billie, Duke
and Ella body models (IT’IS, Zurich, Switzerland)19
were simulated at 295MHz with an 8-channel pTx coil in Sim4Life (ZMT, Zurich, Switzerland). In [7], axial displacements
had the largest local-SAR effects, therefore each model was simulated at one
central, and 19 off-centre positions on the axial plane (figure 1). Other simulation
details followed those in [7].
Network
architecture (figure 2) is adapted from [20]. The Adam21 optimizer
(learning rate= 2e-4) was used to train models in TensorFlow for 60 epochs. Separate
networks were trained for large (5mm) and small (2mm) displacements in rightward
(R) and posterior (P) directions, yielding a total of 8 networks (4 magnitude,
4 phase).
Data were
input to networks as 2-D (256x256) slices of B1-map, with corresponding slices
before (input) and after (ground-truth) a given displacement as input-target
pairs. Networks were validated with the Billie data (excluded during training)
at all off-centre positions, and 6 slice locations (figure 1). All available
relative displacements were included in training and evaluation (ie. the initial
position was not always the origin), meaning networks’ training dataset size
depended on the number of simulated positions fulfilling a relative
displacement. This yielded between 408 and 600 unique input-target slice
pairs. Where necessary networks were cascaded; using the output of one network
as input to the next sequentially (eg. R5mm, R5mm, P2mm networks were cascaded for
evaluation at R10 P2mm position).
Corresponding
magnitude and phase network outputs were combined to form complex predicted
maps (B1predicted). 5-spoke pTx pulses were designed using an
adaptation of [22-23]. 1-spoke (RF-shim) pulses were also designed for SAR
evaluation. For each evaluation, a conventional pulse (pulseinitial)
was first designed using the initial position’s B1-map (B1initial) for
uniform in-plane excitation. A second pulse (pulsepredicted) was
designed using network-output B1predicted (proposed approach).
Both pulses were
subsequently evaluated at the corresponding ground-truth displaced position (B1gt)
to quantify motion-induced effects, and improvement provided by the proposed
approach. Their flip-angle distributions were compared with that of pulseinitial
without motion via root-mean-squared-error (nRMSE), normalised by target
flip-angle (70°). Peak local-SAR (psSAR) of both pulses was also evaluated
using 10-g averaged Q-matrices24.Results and Discussion
Figure 3 shows that the
proposed approach reduced excitation profile error in 91% of evaluations. Motion
caused nRMSE of 79% in the worst-case, which was reduced to 25% by re-designing
pulses using B1predicted. Maximum observed motion-induced phase error
was 0.2 radians lower for pulsepredicted. Largest error reductions
were seen for larger displacements and/or inferior slice locations where
motion-induced error was highest, however pulsepredicted performance
was largely independent of displacement magnitude.
Voxelwise
correlations show that, beyond the smallest movements, B1predicted
resembled B1gt more so than B1initial, including where
models were cascaded multiple times (figure 4). Even for small displacements, motion-induced
error is systematically channel and motion-direction dependent. Residual error
in B1predicted is spatially random in comparison, therefore does not
accumulate when channels are superposed, and thereby avoids regions of very
high or low flip-angle when pulses are applied to B1gt. Residual network
error becomes comparable to motion-induced error when the latter is low, (ie.
smaller displacements), but the benefit of the proposed method is clear for
larger displacements; common among certain patient populations25-26.
Comprehensive network optimization was beyond the scope of this initial
investigation but is expected to further improve network prediction quality.
Following
motion, psSAR was lower for pulsepredicted than pulseinitial
in 82% and 62% of 5-spoke and RF-shimming evaluations, respectively (figure 5).
The method does not guarantee SAR reduction (psSAR of pulsepredicted
was higher for some displacements and slice locations), since these
observations arise incidentally due to compensation of motion-induced B1
changes, and pulses were not SAR-constrained.Conclusions
Motion-resolved
B1-maps can be estimated online using cGANs. These maps can be used for
pseudo real-time pTx pulse-design11-12. Maximum
motion-induced flip-angle nRMSE was reduced from 79% to 25% with the re-designed pulses.
Importantly, networks can be run sequentially
to predict B1-distributions following arbitrary displacements comprising multiple directions. Here, error was reduced
for 18 displacements using networks trained for just 4 displacements.Acknowledgements
No acknowledgement found.References
[1] J. Vaughan, et
al., 7T vs. 4T: RF power, homogeneity, and signal-to-noise comparison in head
images. Mag Res Med,64 (1), pp. 24–30, 2001.
[2] U. Katscher and
P. Bornert, Parallel RF transmission in MRI. NMR Biomed,19 (3), pp.
393–400, 2006.
[3] C. M. Deniz,
Parallel transmission for ultrahigh field MRI. Topics in Mag Res Imag,28 (3),
pp. 159–171, 2019.
[4] U. Katscher, et
al., Basic considerations on the impact of the coil array on the performance of
transmit sense. Mag Res Mat Phys Biol Med, 18 (2), pp. 81–88, 2005.
[5] C. M. Deniz, et
al., Radiofrequency energy deposition and radiofrequency power requirements in
parallel transmission with increasing distance from the coil to the sample. Mag
Res Med, 75 (1), pp. 423–432, 2016.
[6] E. Kopanoglu, et
al. Implications of within-scan patient head motion on B1+ homogeneity and
specific absorption rate at 7T. Proc. Intl. Soc. Mag. Reson. Med. 27,
2019.
[7] E. Kopanoglu, et
al., Specific absorption rate implications of within-scan patient head motion
for ultra-high field MRI. Mag Res Med, 2020.
[8] S. Wolf, et al.,
SAR simulations for high-field MRI: How much detail, effort, and accuracy is
needed? Mag Res Med, 69 (4), pp. 1157–1168, 2013.
[9] N. Schon, et
al., Impact of respiration on B1+ field and SAR distribution at 7T using a
novel EM simulation setup. Proc. Intl. Soc. Mag. Reson. Med., 28, 2020.
[10] E. F. Meliado,
et al., Conditional safety margins for less conservative peak local SAR
assessment: A probabilistic approach. Mag Res Med, 2020.
[11] E. Kopanoglu,
Near real-time parallel-transmit pulse design. Proc. Intl. Soc. Mag. Reson. Med.,
26, 2018.
[12] E. Kopanoglu
and R. T. Constable, Radiofrequency pulse design using nonlinear gradient magnetic
fields. Mag Res Med, 74 (3), pp. 826–839, 2015.
[13] S. Mandija, et
al., Opening a new window on MR-based electrical properties tomography with
deep learning. Scientific Reports, 9 (1), 2019.
[14] S. Bollmann, et al., “DeepQSM - using deep learning to solve the
dipole inversion for quantitative susceptibility mapping. NeuroImage,
195, pp. 373–383, 2019.
[15] E. Meliado et al., A deep learning method for image-based
subject-specific local SAR assessment. Mag Res Med, 83 (2), pp. 695–711,
2020.
[16] S. Abbasi-Rad, et al., Improving FLAIR SAR efficiency at 7T by
adaptive tailoring of adiabatic pulse power through deep learning B1+ estimation.
Mag Res Med, 2020.
[17] J. Maclaren, et al., Prospective motion correction in brain imaging:
A review. Mag Res Med, 69 (3), pp. 621–636, 2013.
[18] P. Digiacomo, et al., “A within-coil optical prospective
motion-correction system for brain imaging at 7T. Mag Res Med, 2020.
[19] M-C. Gosselin, et al., Development of a new generation of
high-resolution anatomical models for medical device evaluation: The virtual
population 3.0. Phys Med Bio, 59 (18), pp. 5287–5303, 2014.
[20] P. Isola, et al., Image-to-image translation with conditional adversarial
networks, 2018. arXiv:1611.07004.
[21] D. Kingma and J. Lei Ba, Adam: A method for stochastic optimization.
Proceedings of the Conference on Learning Representations, 2015.
[22] Grissom, W.et al. Spatial domain method for the design of RF pulses in multicoil parallel excitation. Magnetic Resonance in Medicine, 56, 620–629, 2006.
[23] ISMRM RF Pulse-design Challenge.
http://challenge.ismrm.org/. 2016.
[24] I. Graesslin, et al., A specific absorption rate prediction concept
for parallel transmission MR. Mag Res Med, 68 (5), pp. 1664–1674, 2012.
[25] K. T. Chen, et al., MR-assisted PET motion correction in
simultaneous PET/MRI studies of dementia subjects. JMRI, 2018.
[26] S. Kecskemeti, et al., Robust motion correction strategy for
structural MRI in unsedated children demonstrated with three-dimensional radial
MPNRAGE. Radiology, 289 (2), pp. 509–516,2018.