Lingceng Ma1, Xinran Chen1, Jian Wu1, Lijun Bao1, Shuhui Cai1, Congbo Cai1, and Zhong Chen1
1Department of Electronic Science, Xiamen University, Xiamen, China
Synopsis
A single-shot simultaneous diffusion and T2 mapping method is developed based on overlapping-echo detachment planar imaging (DT2M-OLED) incorporating with deep-learning reconstruction. The method makes it possible to realize simultaneous diffusion
and T2 mapping in around one hundred milliseconds for the first time, and owns an advantage in resisting motion artifacts. The accuracy of the proposed method was verified
by numerical experiment
and in vivo rat brain experiment. Dynamic diffusion and T2 mapping
on rat recovering from
deep anesthesia was also conducted to
test the capability of the proposed method in real-time imaging.
Introduction
Apparent diffusion coefficient (ADC) and T2
maps have been increasingly used to cooperatively estimate various treatment
modalities for diagnosis (e.g. cerebral ischemia, prostate cancer). However, the
collaborative usage of ADC and T2 maps is hampered due to the time limitation
in clinical application, and also suffer from motion artifacts. Quantitative
MRI methods based on overlapping-echo detachment (OLED) are able to deliver parametric
maps in single-shot.1-3 Compared to conventional image
reconstruction method using separation algorithm,1 deep-learning based
method exhibits better performance in image details recovering and higher
robustness to non-ideal radio-frequency (B1) field.2 In this
work, we developed a single-shot synchronized diffusion and T2
mapping based on DT2M-OLED, which is capable of
gaining reliable and self-registered diffusion and T2 maps within 120 ms
for the first time. Methods
In the DT2M-OLED
sequence (Fig. 1(a)), six echoes with two diffusion
weighting and three T2 weighting (Fig. 1(b)) are generated by two
excitation pulses α (α
flip
angle = 60°), refocusing pulses β
(β flip angle =180°), diffusion gradient Gd and echo-shifting
gradients (Gro1, Gro2, Gpe1
and Gpe2) in two echo trains.
U-net was employed for T2
and ADC maps reconstruction. The training dataset were the real parts and
imaginary parts of the overlapping-echo images from two echo trains (matrix size
of 96×96) zero-filled to 160×160 and then randomly cropped into 64 × 64 matrix as
the input of the network (Fig1. (c)). Totally 6000 and 1000 samples were
used for training and testing, respectively. B1 inhomogeneity and Gaussian
noise were added to the training data for accounting for non-ideal experimental
conditions. Adam optimizer was applied with an initial learning rate of 0.0001.
The technique
was tested on numerical and rat brain experiments. Same
sequence parameters were used in DT2M-OLED acquisition for both samples. For the
numerical experiment, parametric maps were also reconstructed by separation
algorithm to demonstrate the advantage of deep learning reconstruction.
In-vivo
experiments were conducted on a 7T Varian MRI system. Two healthy Wistar rats
were used for brain scanning with DT2M-OLED and spin-echo
echo-planar imaging (SE-EPI). Resolution
= 0.3 × 0.3 × 2.0
mm3.
One b = 800
s/mm2 for both sequences and one
b = 0 image for SE-EPI.
SE-EPI
acquired multiple TEs (TE=50/80/110/140 ms) for T2 mapping.
Reference B1 map was calculated from EPI images with flip angle of 60° and 120°, respectively.
Condition A: Rat under deep anesthetic, 16 times signal
averaging for both sequences, TR = 3 s. Condition B: Anesthetic gas
was closed, temporal DT2M-OLED data were
acquired every 3 s during the period of rat recovering from deep sleep without
signal averaging. The acquisition time of one DT2M-OLED scan is 114 ms.
Before temporal DT2M-OLED data acquisition, T2 and ADC
mapping by SE-EPI with and without 16-time averaging were acquired as references.Result & Discussion
The numerical experimental
results in Fig. 2 illustrate that the reconstruction based on deep learning
(DL) is more robust than the one based on separation algorithm (SA). The ADC, T2,
and B1 maps reconstructed from deep learning are in consistent with
the corresponding references. DT2M-OLED has almost the same k-space for
the first echo train as DM-OLED.3 Theoretically, separation
algorithm is capable to reconstruct separated images from all six echoes and
deliver parametric maps. However, 1) echo3 and echo6 for B1 estimation
makes k-space more crowded. 2) The echo with diffusion weighting also has
heavier T2 weighting (echo1) than the echo without diffusion
weighting (echo2) in the first echo train and echo6
with diffusion weighting owns the heaviest T2 weighting, which intensifies
the differences between overlapping echoes. These factors corrupt the quality
of reconstructed images via separation algorithm. Therefore separation
algorithm is not efficient enough for DT2M-OLED reconstruction.
Fig.
3 illustrates the
results of a rat brain with completely anesthetized. The ADC, B1 and T2 maps from DT2M-OLED show a good concordance to those from SE-EPI in all maps. The statistic segmentation results further verify the reliability of DT2M-OLED. The fiber orientations reflected
by the ADC values are consistent
with the
physiological structure reported
previously.4
Fig.
4 exhibits the results of a rat brain suffered from motion effect and lower signal-to-noise
ratio (SNR). The
T2 maps
show good consistency with each other while rat was moving. No signal averaging
was conducted in both sequences acquisition. The parametric maps from DT2M-OLED exhibit a bit smoother due to low SNR,
but still show better contrast than SE-EPI results without signal averaging. These results indicate
that DT2M-OLED is quite robust under motion environment. Self-registration between T2
and ADC maps makes DT2M-OLED competent for cooperative diagnosis via
T2 and ADC mapping.Conclusion
This study proposed an ultrafast method to deliver
self-registered T2
and ADC maps in a
single acquisition, which offers the possibility of bringing joint T2 and ADC imaging into clinical routine with unprecedented efficiency and motion robustness. Deep-learning
based reconstruction further enhances the accuracy of parametric maps recovery. As a time-efficient multi-parametric imaging method, DT2M-OLED may facilitate multi-parametric quantitative diagnosis
and dynamic quantitative MRI.Acknowledgements
This work was supported by the National Natural Science Foundation of China under grant numbers U1805261, 11761141010, 11775184 and 82071913.References
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