Jichang Zhang1, Faisal Najeeb2, Xinpei Wang1, Pengfei Xu1, Hammad Omer2, Penny Gowland 3, Sue Francis3, Paul Glover3, Richard Bowtell3, and Chengbo Wang1
1SPMIC, The University of Nottingham Ningbo China, Ningbo, China, 2COMSATS University Islamabad, Islamabad, Pakistan, 3SPMIC, The University of Nottingham, Nottingham, United Kingdom
Synopsis
This work presents a free breathing Dynamic
Contrast Enhanced MRI (DCE-MRI) reconstruction method called L+S (Low rank plus sparse) with joint
sparsity, which improved dynamic contrast performance through integrating an
additional temporal Fast Fourier Transform (FFT) constraint by extending the
standard L+S decomposition method. Fast Composite Splitting Algorithm (FCSA) is
implemented to solve the L+S optimization problem in proposed method, and
to minimize the computation complexity from joint sparsity constraints. The proposed
method achieved high spatial-temporal resolution, high reconstruction
efficiency and improved dynamic contrast simultaneously when comparing with other
methods in reconstructing a simulated phantom dataset and a DCE-MRI dataset.
Introduction
DCE-MRI is widely used for detecting and characterizing
tumors and other lesions. Typically, images are rapidly acquired in
different contrast-enhancement phases. Golden-Angle Radial Sparse Parallel (GRASP) MRI[1] is a recently proposed reconstruction technique which
provides high spatial and temporal resolutions for DCE-MRI. L+S decomposition[2] is another reconstruction
scheme which subdivides image series into temporally correlated background L and dynamic
varied sparse information S. It enables an efficient
reconstruction using Iterative Soft Thresholding Algorithm (ISTA). Both GRASP and L+S decomposition
employ the temporal Total Variation (TV) as the sparsity transform to eliminate the temporal variations. However, dynamic contrast signal induced by injecting the contrast
agent gradually varies along the temporal dimension. The “averaging effect”
from the temporal TV degrades the dynamic contrast of DCE-MRI. Temporal FFT is
another sparsity constraint which explores the temporal sparsity through gradually
eliminating frequency components with negligible magnitude. Since the intensity
of DCE signal is assumed to be varying temporally at low frequency, these low frequency components can be
reserved by temporal FFT to maintain the dynamic contrast. Here, we introduce both temporal FFT and temporal TV to L+S model, compressing the undersampling artefacts and maintaining the dynamic contrast simultaneously for improved DCE-MRI reconstruction.Method
The proposed reconstruction scheme is mathematically formulated as: $$ argmin_{L,S}=\frac{1}{2}\left \| E(L+S)-d \right \|_{2}^{2}+\lambda_{L}\left \| L \right \|_{*}+\lambda_{T}\left \| TS \right \|_{1}+\lambda_{F}\left \| FS \right \|_{1} \qquad \qquad [1]$$ where $$$ E $$$ is the multi-coil encoding operator and $$$ d $$$ is the acquired data. $$$ T $$$ is the temporal TV sparsity transform while $$$ F $$$ is the temporal FFT based sparsity transform, and parameters $$$ \lambda_{L} $$$ , $$$ \lambda_{T} $$$ and $$$ \lambda_{F} $$$ are trade off data consistency
versus complexity of solution given by the nuclear norm $$$ \left \| \cdot \right \|_{*} $$$ and $$$ L_{1} $$$
norm $$$ \left \| \cdot \right \|_{1} $$$.
Two golden angle radial sampled datasets including a simulated phantom dataset and a free breathing liver DCE-MRI dataset were adopted to evaluate
the performance of the proposed method. A shepp-logan computer model with 384*384 voxels was created,
and the simulation was performed by solving Bloch equations. Eight
different sensitivity field maps were integrated into the simulation, forming
multiple virtual channels. Signal intensity of certain areas of the shepp-logan
phantom were varied with the designed dynamic contrast model as used in [1]. A total of 588 spokes with 384 readout points in each spoke were acquired. A group of fully sampled reference images were generated as the benchmark. A free breathing liver DCE-MRI
dataset offered by Li et al [1] was adopted. The corresponding parameters for the liver
dataset:
TR/TE=3.52/1.41ms, 8 channels, 588 spokes with 384 readout points each.
Both two datasets were subdivided
into 21 frames with the
temporal resolution of 28 spokes/frame. The corresponding acceleration factor is 21.5. These two datasets were reconstructed and
compared by using NUFFT, standard GRASP, L+S decomposition and our proposed method. FCSA [3-5] was employed to solve the reconstruction scheme with
multiple constraints in the proposed model. All the
reconstructions were repeated 10 times. The Euclidean
distance between the reconstructed DCE curves and the
reference curve was calculated to evaluate the performance of capturing the
dynamic signal changes for each method. The average reconstruction time, the peak DCE
signal and the average DCE signal were calculated and compared for both
datasets using all methods. All the reconstructions were performed using MATLAB
2019b (MathWorks, Natick, MA) on an Intel Core i7-4790 PC with a 3.6 GHz
processor.Results & Discussion
Figure 1 and Figure 2 show a
comparison of GRASP, standard L+S and L+S with joint sparsity in reconstructing
the simulated phantom dataset and free breathing liver dataset respectively. For
liver dataset, two L+S based techniques present better background structure of liver.
Better dynamic contrast of tissues (labelled by solid arrows) was observed in
GRASP and the proposed method. Blurring was observed in standard L+S reconstruction
(labelled by dashed arrows) due to the degradation of dynamic contrast. Figure 3 and Figure 4 demonstrate the average reconstruction time and corresponding dynamic
performance of the three schemes in two datasets. Our proposed method and
standard L+S achieved similar reconstruction efficiency. The peak of dynamic signal
was degraded by 12.7%, 19% and 20.7% for our proposed method, GRASP and
standard L+S method compared to the reference. Using the
reference dynamic curve as the benchmark, the Euclidean distance of our proposed method is 0.0157 which is much smaller other two schemes, suggesting that our
method can capture the dynamic varying arterial signals much better as
shown in Figure 4a. In Figure 4b, the peak dynamic signal in liver dataset in the
proposed method demonstrated an increase in peak DCE signal by 24.8%
and 33% than that of GRASP and standard L+S method respectively.Conclusion
A low rank with joint sparsity framework is proposed and evaluated for improved DCE-MRI reconstruction. Our proposed L+S based method achieved
around 4 times faster reconstruction speed than GRASP method. The computation cost from additional sparsity constraint is negligible with the support of
FCSA. Clear improvement of dynamic contrast was achieved by utilizing joint sparsity constraints in the proposed method. Acknowledgements
National Key R&D Program of China: 2019YFC0118700References
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