Yang Ji1,2, Borjan Gagoski 2,3, W. Scott Hoge 1,2, Yogesh Rathi 1,2, and Lipeng Ning 1,2
1Brigham and Women’s Hospital, Boston, MA, United States, 2Harvard Medical School, Boston, MA, United States, 3Boston Children’s Hospital, Boston, MA, United States
Synopsis
Recently, several studies have
shown that brain tissue consists of microscopically heterogeneous components
that are characterized by different T2 values and diffusivity. The joint
relaxation-diffusion MRI technique has been developed to probe the intrinsic
tissue microstructure that cannot be probed using standard dMRI. However, a
major limitation of the relaxation-diffusion MRI technique is the long scan
time for acquiring dMRI with multiple TEs. In order to significantly reduce the
scan time, we propose a time-division multiplexing based echo-planar imaging
(TDM-EPI) sequence, which can accelerate relaxation-diffusion MRI and standard
dMRI by 2 or 3 folds.
Introduction
Joint relaxation-diffusion MRI techniques
have been developed to probe the intrinsic tissue microstructure. Suitable
joint analysis methods of this two-dimensional data has been used to develop
several methods such as, diffusion-relaxation correlation spectroscopy1,2, relaxation-independent diffusion
indices3 and T2-resolved multi-compartment
models4-7 to improve
tissue microstructural characterization. However, a major limitation of the
joint relaxation-diffusion MRI technique is the long scan time required for
dMRI with multiple echo times (TEs). To overcome these limitations, we propose an
EPI-based pulse sequence using concepts of time-division multiplexing (TDM)
referred as TDM-EPI to reduce the scan time. TDM-EPI interleaves excitation and
readout train for two or more separate slices and exploits an echo-shifting
technique8 to simultaneously acquire multiple slices. By arranging the
sequence components for each slice and adjusting the echo-shifting gradients,
the diffusion weighted images from separate slices can be acquired at same or
different TE. Thus TDM-EPI will not only accelerate relaxation-diffusion MRI but
also standard dMRI with a single TE. Based
on experiments on phantom and in-vivo human brain imaging, we show that TDM-EPI
can shorten scan time by two to three folds without reducing image quality when
compared with the standard EPI.Methods
Figure 1shows the diagrams of three
TDM-EPI sequences, referred to as TDM-2s, TDM-2e and TDM-3e, in which two or
three sets of RF pulses are applied to two or three separate slices, with the
corresponding event blocks being arranged so that TE can be the same or
different across slices. Additional slice-rephasing gradients (gray color) are
inserted to compensate for the phase dispersion induced by the slice-selection
gradients. In order to separate the signals from different slices, an
echo-shifting gradient (red color) is added between two 180° refocusing pulses
to shift the k-space of one TDM slice away from that of the others. Before EPI
readout of each TDM slice, a rephasing gradient is added to rephase the echo
signal of one slice and concurrently dephase that of the other slices. We
specified the amplitude of echo-shifting gradient as $$$G_{x}(t)=G(t)cos\theta$$$, $$$G_{y}(t)=G(t)sin\theta$$$ in the sequence implementation to keep the
amplitude as G(t). We introduce an echo
shifting factor $$$k_{shift}=\gamma\sqrt{(\int_{}^{}G_{x}(t)dt)^{2}+(\int_{}^{}G_{y}(t)dt)^{2}}=\gamma\int_{}G(t)dt$$$ to represent the shifting degree. To
determine the optimal echo-shifting gradient, we evaluated the relationship
between signal leakage level across from one slice to the other and the
shifting factor by only turning on one excitation RF pulse.
The echo-shifting gradients have minor
contributions to diffusion-encoding. Though the b-value of the echo-shifting
gradient alone is negligible, e.g. ~2 s/mm2, it may be coupled with
the diffusion gradient and lead to non-negligible double diffusion encoding
(DDE) effect that depends on the relative angle between the two. To eliminate
the coupling between the two gradients, we adaptively applied the echo-shifting
gradient along the orthogonal direction to the diffusion gradient, thereby
nearly eliminating this effect.
Data were obtained on a 3T MAGNETOM
Prisma scanner using the proposed TDM-EPI and standard EPI sequences. We
acquired diffusion image datasets with a single TE and multiple TEs using TD-2s
and TDM-2e, TDM-3e sequences, respectively. The scan protocols for the diffusion
experiments were as follows: TR =3000ms, FOVxy=210×210mm2, PF=6/8,
2.5mm isotropic resolution, TE =78 for
TDM-2s, two sets of TE (70 ms, 110 ms) and (90 ms, 135 ms) for TDM-2e, TE = (72
ms, 102 ms and 132 ms) for TDM-3e. Datasets with same parameters were collected
for comparison using standard EPI.
Results
To show that suitable echo-shifting
gradients can minimize the signal leakage across slices, Figs. 2A and 2B illustrate
the three slices from a TDM-3e sequence with $$$k_{shift}$$$=2.0 rad/mm and $$$k_{shift}$$$=4.8 rad/mm. Residual
signals can be observed with $$$k_{shift}$$$=2.0 rad/mm while can hardly be
noticed with $$$k_{shift}$$$=4.8 rad/mm.
To examine the coupling between the
echo-shifting and diffusion gradients, three representative directions of echo-shifting
gradient relative to diffusion gradients have been investigated on water
phantom. Figure 3 shows the phantom images obtained by TDM-3e and the
corresponding ratio maps of the images to those obtained by standard EPI. For
b= 800 s/mm2, a significant difference between three ratio maps can
be observed in parallel and antiparallel directions. On the other hand, the
signal intensities are barely different when the two gradients are in
orthogonal directions.
Figures 4 compares the images
obtain by TDM-3e and conventional EPI sequences. Figures 5A-5C illustrate the MD,
FA and the color-coded DTI maps with different TEs of one slice obtained by the
TDM-3e and conventional EPI sequences, respectively. The T2 maps and
the TE-independent DTI-based metrics estimated using REDIM9 are obtained by
joint analysis of acquired data with multiple TE. Discussion and Conclusion
We proposed a set of TDM-EPI pulse
sequences that can accelerate the acquisition of dMRI with a single or multiple
TE by a factor of 2x or 3x. We optimized the echo-shifting gradients using a water
phantom and using in-vivo human brain scans and validated that the acquired
images using TDM-EPI had similar quality as those acquired by conventional EPI.
Thus, TDM-EPI can potentially accelerate scan time of standard dMRI and relaxation-diffusion
MRI to allow its widespread use to investigate mental disorders.Acknowledgements
This
study was supported in part by NIH grants R21MH116352,
K01MH117346, R01MH119222, R01MH116173.References
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