TING YIN1, Chao Ma2, Shiyue Chen2, Rolf Gruetter1, and Jianping Lu2
1CIBM-AIT, École polytechnique fédérale de Lausanne, Lausanne, Switzerland, 2Department of Radiology, Changhai Hospital of Shanghai, Shanghai, China
Synopsis
Intravoxel
Incoherent Motion (IVIM) model has shown the potential of contrast free
perfusion estimation in pancreatic diseases study, while IVIM quantification is
challenging for conventional free-breathing DWI data due to the presence of high
level noise. In this study, we demonstrated that motion correction and
denoising can improve the sampling accuracy which allows for pixel-wise
parametric maps with acceptable reproducibility.
Introduction
Diffusion weighted imaging (DWI) is a promising tool to facilitate pancreatic
tumor detection and characterization (1).
Among the diffusion reconstruction methods, the Intravoxel Incoherent Motion
(IVIM) model becomes popular since it shows potential in providing perfusion
related parameters without administration of contrast agents (2). Accurate estimation of perfusion
parameters in IVIM model requires high SNR data, however, DWI in pancreas
suffers from sampling error due to respiration and bowel peristalsis motion,
the latter is unpredictable. In this study, we aim to investigate the
possibility of tissue characterization in pancreatic tumor patients using
free-breathing IVIM diffusion data after retrospective motion correction and
noise removal. DWI metrics reproducibility was assessed in repeated scans. Considering the
reproducibility analysis might be affected by the inherent heterogeneity of
pancreatic adenocarcinoma, pancreas from healthy subjects were also included in
the study.Methods
A total of 32 patients with pancreatic tumors and
17 healthy volunteers were scanned on a 3.0 T clinic system (GE Signa MR 750). Free-breathing
2D diffusion-weighted imaging (3-trace) was performed using axial single-shot
EPI sequence with the following parameters: b = 0, 25, 50, 75, 100, 150, 200,
400, 600, 800 s/mm2, TE/TR = 76/4000 ms, 256×256 matrix (Interpolated),
in plane 1.5×1.5 mm2, 24 slices with thickness of 6 mm and 1 mm gap.
All subjects were scanned twice in the same session. After the first scan, each
subject was requested to re-enter the scanning room and re-positioned for a
repeated MRI scan.
For data pre-processing, first, motion
correction was achieved in the Advanced Normalization Tools
(ANTs). In which, pair-wise
deformable registration (3)
with mutual information
metric was performed for each diffusion-weighted volume, using b = 200 image as
template. Motion corrected data was further filtered using local PCA based
denoising (4) approach with a local patch
radius of 2.
The IVIM parameters were estimated from a
segmented fitting approach: pure diffusion
coefficient Dt was calculated from b ≥ 200 data using mono-exponential model; then
estimated b = 0 map, perfusion fraction Fp and the pseudo-diffusion coefficient
Dp were fitted using nonlinear least-square solver in Matlab. Region of
interest (ROIs) were determined by user for each scan, either on healthy
pancreas or within the pancreatic tumor, mean IVIM parameters in ROIs were used
for reproducibility analysis. The 95% Bland-Altman limits of agreements and
inter-subject coefficient of variation (CV) were reported. Results
Non-linear deformable registration combing with
local PCA based denoising have shown the potential of “freezing” the pancreas
and pancreatic adenocarcinoma from both in plane and through plane motion artifact
induced by peristalsis movement (Figure 1). The pancreas was less affected by
respiration motion artifact at this anatomic level compared to the liver. Tissue
boundary was well preserved after pre-processing, while contrast was slightly
smoothed within tissue (Figure 2). Pixel-wise IVIM parameter maps were
generated from two step fitting (Figure 3). In general, pancreatic adenocarcinoma has a lower perfusion fraction compare to adjacent
pancreas tissue. Due to the limited sampling of b<100 data, the estimation
of Dp is still challenging (CV>90% for tumor). Reproducibility of repeated
scans was presented in Bland-Altman plot (Figure 4). Inter-subject CV for pancreatic
tumor is generally higher than in healthy pancreas. In healthy pancreas,
inter-subject CV is 8.9% for Dt and 11% for Fp.Discussion and conclusion
Though IVIM modeling has the
potential ability to provide contrast free perfusion metrics in pancreatic
cancer study, IVIM quantification is challenging due to the high sensitivity to
noise and limited sampling in low b values. Previously a few studies have
applied Bayesian methods (5,6) which have
proven to be robust to noise, however the fitting procedure is time consuming. Here
in this study, we demonstrated that the sampling error and low signal-to-noise
ratio in conventional free-breathing DWI data can be partially recovered by
motion correction and denoising steps. Acknowledgements
This work was supported by the Centre
d’Imagerie BioMédicale (CIBM) of the UNIL, UNIGE, HUG, CHUV, EPFL and the
Leenaardsand Louis-Jeantet Foundations, and the National Natural Science
Foundation of China (81601468).References
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