Ryan T Oglesby1,2, Wendy Oakden2, Wilfred W Lam2, Agata Chudzik3, Katarzyna Kochalska3, Radoslaw Rola3, and Greg J Stanisz1,2,3
1Medical Biophysics, University of Toronto, Toronto, ON, Canada, 2Sunnybrook Research Institute, Toronto, ON, Canada, 3Neurosurgery and Paediatric Neurosurgery, Medical University of Lublin, Lublin, Poland
Synopsis
The development of quantitative MRI sequences
at ultra-high field (UHF) (7 T or higher) is difficult due to non-uniform RF
fields, enhanced susceptibility artifacts, and increased SAR. Phantoms are
required in order to test quantitative pulse sequences, and it becomes
increasingly important that artifacts in phantoms be as similar as possible to
those observed in vivo. In this study, a 3D printed
three-compartment spherical phantom was designed to evaluate chemical exchange
saturation transfer (CEST), magnetization transfer (MT), and T1 mapping sequences on UHF MRI systems.
Introduction
Ultra-high
field (UHF) MRI systems, 7 T (≥300 MHz) or higher, have the benefit of
increased signal to noise ratio allowing finer structures at the mesoscopic
scale to be visualized and smaller physiological effects to be detected 1. However, UHF comes
with additional challenges including non-uniform radio frequency (RF) fields, greater
susceptibility artifacts, and larger energy deposition 2. Phantoms are required
in order to test quantitative pulse sequences, and it becomes increasingly
important that artifacts in phantoms be as similar as possible to those
observed in vivo. In this study, a phantom was designed to evaluate chemical
exchange saturation transfer (CEST), magnetization transfer (MT), and T1
mapping sequences on UHF MRI systems. Methods
Phantom Design: Figure
1 shows a phantom schematic. A spherical geometry was required for B
0
shimming and to fit a head coil. The fill port locations were chosen to reduce air
bubble formation, which would cause field inhomogeneities. Three compartments
were included to allow ranges of T
1, CEST, and MT parameters similar
to those observed
in vivo. The phantom was 3D printed (Viper si, 3D
Systems) out of Accura ClearVue.
Sample Preparation:
Agar (1% mass/volume) provided MT
contrast, Copper (II) sulfate pentahydrate (CuSO
4·5H
2O) to affect T
1, and ammonium
chloride (NH
4Cl) to provide CEST contrast. Compartments were filled
as follows:
- 0.5mM
CuSO4·5H2O
+ 100mM NH4Cl
- 0.5mM
CuSO4·5H2O
+ 50mM NH4Cl
- 1.0mM
CuSO4·5H2O
+ 50mM NH4Cl
MRI Acquisition:
3T
scanning was performed using Achieva system (Philips Medical Systems, Best, The
Netherlands) using a Q-body transmit coil and a SENSE-Head-8 receive coil. Following
a structural 3D FLAIR sequence, a single slice through all three compartments
was selected for quantitative imaging. Second-order, pencil-beam shimming was
performed over the slice of interest. Saturation-transfer weighted images were
obtained with saturation transfer preparation (four 242.5ms block pulses with
2.5ms gaps; amplitudes and offsets in Table 1) and turbo field echo (TFE) readout
(TFE factor = 26). In addition to the CEST- and MT-sensitive images, a WAter
Saturation Shift Referencing (WASSR
3) spectrum was obtained
to calculate a B
0 map and a WAter frequency Shift B
1
Amplitude (WASABI
4) was used to calculate
a B
1 map. A T
1 map was calculated from five IR-prepared TSE
sequences (TR/TE = 5000/6.2ms; TI = 50 - 4500ms; TSE factor = 10).
7T scanning was
performed using Discovery MR950 system (GE Healthcare, Waukeshaw, WI) using a 32-channel
receive head coil and a 2-channel transmit birdcage head coil. A 3D FLAIR
sequence was used for structural scanning. Saturation-transfer weighted images
were acquired using the epiCEST sequence with saturation transfer preparation
(one block pulse of 1500ms; amplitudes and offsets in Table 1) and a
single-shot EPI readout. Three images were acquired consecutively at each
saturation offset, and only the third image was used in the analysis because it
was in saturation steady state. The GE Field Map protocol was used to produce B
1
and B
0 maps. The standard “Autoshim” procedure was used to provide
x-, y- and z-gradient shims over the whole phantom.
Results
Figure
2 shows imaging results from 3T. 3D FLAIR (Fig. 2a) shows the three phantom
compartments. The T1 map (Fig. 2b) shows the lower T1 in
the compartment with higher concentration of CuSO4·5H2O, and the higher T1 in the other
two compartments. B0 and B1 maps (Fig. 2c&d) show the
variation in B0 and B1 across the phantom.
Figure 3 shows imaging results from
both phantom and human brain acquired at 7T. The variation in B0
is similar in the phantom and in the brain (Fig. 3b&f), except near the
sinus cavities which cause larger field variations in the brain. The B1
maps (Fig. 3c&g), display a similar pattern in both phantom and brain with
higher flip angles near the center, and lower flip angles near the edges.
Figure
4 shows CEST spectra from brain and from phantom compartments with high and low
CEST contrast. The size of the CEST peaks are comparable to that observed in
vivo.Discussion
The
similarities in variation and pattern in B0 and B1 fields
between phantom and brain data indicates that both will require a similar
degree of correction.
MT
and CEST contrast are both present in the phantom, in addition to having T1 values in a similar range to that of brain.
This is important as the CEST signal is affected by both MT and T1. The amount of CEST contrast is similar to
that in brain (Fig. 4) which will allow the variability due to imaging
artifacts to be estimated. The variation in T1 values in the center
and right-most compartments (Fig. 2b) are the result of small effects of NH4Cl on T1. It is possible to
adjust the amount of CuSO4·5H2O in order to match the T1
values perfectly, but this is unlikely to be necessary. Conclusions
The three-compartment spherical phantom
is a durable, user friendly, and customizable research tool which successfully mimics
the CEST, MT, and T1 properties of the human brain as well as having
similar variations in B0 and B1. The multi-compartment phantom
is ideal for development and testing of quantitative CEST sequences. Acknowledgements
We thank the Canadian
Institutes for Health Research (PJT156252) for financial support.References
- Dumoulin SO, Fracasso A, van der Zwaag W, Siero JCW,
Petridou N. Ultra-high field MRI: Advancing systems neuroscience towards
mesoscopic human brain function. Neuroimage 2018;168:345–357.
- Ladd ME, Bachert P,
Meyerspeer M, et al. Pros and cons of ultra-high-field MRI/MRS for human
application. Prog Nucl Magn Reson Spectrosc 2018;109:1–50.
- Kim M, Gillen J,
Landman BA, Zhou J, van Zijl PCM. Water saturation shift referencing (WASSR)
for chemical exchange saturation transfer (CEST) experiments. Magn Reson Med
2009;61:1441–1450.
- Schuenke P,
Windschuh J, Roeloffs V, Ladd ME, Bachert P, Zaiss M. Simultaneous mapping of
water shift and B1 (WASABI)-Application to field-inhomogeneity correction of
CESTMRI data. Magn Reson Med 2017;77:571–580.