Aurélien Massire1,2, Chaithya G R3, Loubna El Gueddari3, Franck Mauconduit1, Carole Lazarus1, Mathilde Ripart1, Pierre Brugières4, Philippe Ciuciu3, and Alexandre Vignaud1
1CEA\DRF\JOLIOT\NeuroSpin\UNIRS, Gif-sur-Yvette, France, 2Siemens Healthcare SAS, Saint-Denis, France, 3CEA\DRF\JOLIOT\NeuroSpin\PARIETAL, Gif-sur-Yvette, France, 4AP-HP, Hôpital Henri Mondor, Service de Neuroradiologie, Paris, France
Synopsis
Compressed
sensing (CS) theory has been successfully employed to drastically reduce MRI
acquisition time. Recently, a new optimization-driven algorithm (SPARKLING) was
proposed to design optimal non-Cartesian sampling patterns for CS-MRI. This
method has several advantages compared to radial or spiral non-Cartesian
imaging, yet the question on how the acceleration factor
should be selected to ensure satisfactory image quality should be investigated.
In this work, we applied the SPARKLING method for 3D susceptibility-weighted
imaging, achieving 500μm in-plane resolution and full brain coverage in 3
minutes at 3T (6-fold acceleration compared to fully-sampled Cartesian
imaging).
Introduction
Accelerating
data acquisition while maintaining image quality in MRI has been a major
interest in recent years. Using the Compressed sensing (CS) strategy1,2,
data can be massively undersampled by a given acceleration factor compared to
a fully-sampled Cartesian acquisition, while ensuring conditions for optimal
image recovery. Recently, a new optimization-driven algorithm, called Spreading
Projection Algorithm for Rapid K-space sampLING (SPARKLING3), was
proposed to design optimal non-Cartesian sampling patterns for CS-MRI. Still,
the question on how the maximum acceleration factor should be selected as a function
of the acquisition matrix size and the available signal in order to maintain a
desired image quality for SPARKLING, has been scarcely addressed4.
In this work, we applied the stack-of-SPARKLING method for 3D
susceptibility-weighted imaging (SWI) and investigated for a favorable
parametrization on an MR phantom, ultimately achieving a full brain coverage in
a clinically-compatible acquisition time (TA) on a healthy volunteer at 3T.Methods
3D prospective
acquisitions were performed at 3T (Siemens Healthineers Skyra & Prismafit,
Erlangen, Germany) using 64-ch head coils and a 3D GRE sequence compatible with
arbitrary gradients on one healthy volunteer (male, 45 yo) and on an MR phantom
(NIST, Gaithersburg,
MD, USA). The nominal gradient amplitude and slew rate were 40 mT/m and 180
T/m/s, respectively. SWI acquisition parameters were set as follows: TR=37ms,
TE=20ms, FA=15°, Tobs=20ms, partition number Nz=64. An example of 2D
SPARKLING trajectory is illustrated in Figure 1. In the search of favorable SPARKLING
parametrization on MR phantom, multiple acceleration factors (AF), subsampling
factors (R) and matrix sizes were used, while keeping the same spatial
resolution (note: only in-plane acceleration was investigated). Parameters for
Cartesian and SPARKLING acquisitions are provided in Figure 2. Non-Cartesian
data were reconstructed by minimizing a classical CS multichannel regularized
criterion balancing the trade-off between data consistency and L1-based
sparsity in the wavelet domain5. Structural similarity metrics
(SSIM) were computed between SPARKLING images and the Cartesian reference to
quantify image quality. SWI phase processing6 was achieved using a
high-pass customized Hanning filter and
Homodyne detection.Results
Figure
3 illustrates SPARKLING acquisition results on phantom. SSIM scores showed
increased SPARKLING image fidelity when larger matrix sizes are used while: 1/
keeping the TA constant (central row), and 2/ keeping the AF constant (bottom
row). Cartesian and SPARKLING in vivo
SWI images are compared in Figure 4. Reference Cartesian acquisition with
GRAPPA3 parallel imaging exhibited very high image quality for a TA>6 min.
The SPARKLING acquisition, even with a larger matrix size, was twice as fast
and successfully maintained image quality, with overall similar image contrast
and slightly degraded spatial resolution. The depiction of venous contribution
in SWI signal is clearly possible in SPARKLING images. Off-resonance
artifacts requiring additional corrections7 are also visible. The
Cartesian acquisition with a comparable TA (in-plane GRAPPA8) showed extremely poor
image quality.Discussion
SWI requires
relatively long TE and Tobs and could therefore benefit from SPARKLING to
drastically reduce TA, or to reach spatial resolution commonly achieved at
ultra-high field using a clinical setup.
Phantom acquisitions with matrix sizes significantly larger than the object
outperform acquisitions with smaller matrices, presumably revealing an optimal
regime for the SPARKLING method. However, the gain in TA of SPARKLING
acquisitions using matrix sizes twice as large as Cartesian reference is
ultimately halved. Nevertheless, SPARKLING achieved better relative
performances than conventional parallel imaging techniques (in-plane GRAPPA8)
both in terms of image quality and TA reduction. In the future, undersampling
along the third dimension, or full 3D SPARKLING patterns, could contribute to
further TA reduction9. Objective comparisons with spiral10,
segmented-EPI11, and CAIPIRINHA12 imaging are still
required to assess this promising technique.Conclusion
Overall,
these preliminary results showed a favorable operating regime for SPARKLING
when large matrix sizes are used. Using such parametrization, 500µm in-plane
resolution SWI was successfully achieved in only 3 minutes at 3T using
stack-of-SPARKLING. Ongoing work toward retrospective reconstruction of
undersampled data using various SPARKLING trajectories should contribute to
uncover this optimal regime.Acknowledgements
This project has
received financial support from the CEA DRF ‘Invention’ funding program through
the ‘MANIAC’ project.References
1Lustig et al. Sparse MRI: the application of compressed sensing for
rapid MR imaging. Magn Reson Med 58:1182-1195 (2007).
2Lustig et al. Compressed sensing MRI. IEEE Signal Process Mag 25:72-82
(2008).
3Lazarus et al. SPARKLING: variable-density k-space filling curves for
accelerated T2*-weighted MRI. Magn Reson Med 81:3643-3661 (2019).
4Lazarus et al. An empirical study of the maximum degree of undersampling
in compressed sensing for T2*-weighted MRI. Magn Reson Imaging
53:112-122 (2018).
5El Gueddari et al. Self-calibrating nonlinear reconstruction algorithms
for variable density sampling and parallel reception MRI. 10th IEEE
Sensor Array and Multichannel Signal Processing workshop (2018).
6Haacke et al. Susceptibility weighted imaging (SWI). Magn Reson Med 52:612-618 (2004).
7Man et al. Multifrequency Interpolation for Fast Off-resonance
Correction. Magn Reson Med 37:785-792 (1997).
8Griswold et al. Generalized autocalibrating partially parallel
acquisitions (GRAPPA). Magn Reson Med 47:1202-1210 (2002).
9Lazarus et al. 3D SPARKLING for accelerated ex vivo T2*-weighted
MRI with compressed sensing. ISMRM 2019 p4573.
10Lee et al. Fast 3D imaging using variable‐density spiral trajectories with applications to limb
perfusion. Magn Reson Med 50:1276-1285 (2003).
11Sati P. Diagnosis of multiple sclerosis through the lens of
ultra-high-field MRI. J Magn Reson. 291:101-109 (2018).
12Breuer et al. Controlled Aliasing in Parallel Imaging Results in Higher
Acceleration (CAIPIRINHA) for Multi-Slice Imaging. Magn Reson Med 53:684-691
(2005).