Hendrik Mattern1, Robert Odenbach2, Niklas Thoma3, Frank Godenschweger1, and Oliver Speck1,4,5,6
1Biomedical Magnetic Resonance, Otto-von-Guericke University, Magdeburg, Germany, 2Institute for Medical Engineering, Otto-von-Guericke University, Magdeburg, Germany, 3Department of Mechanical Engineering, Otto-von-Guericke University, Magdeburg, Germany, 4German Center for Neurodegenerative Disease, Magdeburg, Germany, 5Center for Behavioral Brain Sciences, Magdeburg, Germany, 6Leibniz Institute for Neurobiology, Magdeburg, Germany
Synopsis
A low-cost rotation device was designed and built to enable
remotely controllable phantom movements. With the device, motions are highly
reproducible. For cross-calibrations of external tracking systems, it prevents
table movement or the need to move the phantom by hand from inside the scanner
during the calibration, reduces the overall calibration duration, and provides similar
calibration performance compared to the freehand approach performed by an
expert. The CAD model was made publically available.
Introduction
Precise motion tracking with optical systems enables
prospectively motion-corrected, ultra-high resolution MRI1. These external
systems detect motion within their coordinate systems. To transform the
estimates into the MR reference frame a cross-calibration is required2.
During calibration, prescribed motion trajectories (commonly 180°-rotations)
are performed and recorded in both coordinate systems to estimate the transformation.
Errors in the cross-calibration can reduce the motion correction performance3.
Due to the long bore of a 7-Tesla MRI, phantom rotations are
either performed by an operator staying inside the scanner during the entire
calibration or by moving the table out, rotating the phantom, and re-positioning
the table. Imperfect re-positioning can result in calibration errors. To
overcome this, a remotely controllable rotation device (RotDev) was built
and validated regarding its motion reproducibility and cross-calibration
performance.Methods
All calibrations were performed by a motion correction
expert (5+years’ experience) on a 7-Tesla system (Siemens Healthineers,
Germany) with an 8-channel head-coil (RAPID Biomedical, Germany). A GRE-based cross-calibration
sequence (TA=0:30min, 3mm voxel size) was acquired before and after
the rotation. This sequence provided estimates of the performed motion and
residual displacement after motion correction induced by cross-calibration
imperfections2. Freehand rotations were performed by moving the table in and
out. The initial cross-calibration was derived by detuning a previously
obtained calibration (translation components rounded to the next integer, rotational
components altered by 0.5-1.25°).
Rotation device
To enable remotely controlled rotations about two axes,
hence to make table movement obsolete, an MRI-compatible RotDev was designed
to fit into the narrow head-coil (see Fig.1). The CAD model4 and construction details5 of the
low-cost device (~170€) are publicly available. Within the device, the phantom is
positioned 30°-inclined and rotations about two independent axes can be
performed from outside the scanner: 1.) 180°-rotation about the 30°-inclined axis
operated by strings, 2.) 360°-rotation about the vertical axis operated by a
gear system (see Fig.2).
Motion reproducibility
To compare the precision of the freehand approach and the
RotDev, five 180°-rotations were performed for each method respectively.
Cross-calibration: freehand vs rotation device
For both approaches (set-ups in Fig.3) cross-calibrations
were obtained by performing eight 1-step and one 4-step calibration (both
starting with the same detuned, initial transform). The final calibrations were
compared for two different motions. Each motion consisted of 180°-rotations about
the RotDev's two independent axis to maximize
residuals.
Commonly, a single pre-motion scan cannot be re-used by
multiple post-motion scans. Hence, each calibration test requires (potentially
imperfect) re-positioning of the phantom and re-acquisition of the pre-motion scan.
Here a workaround (see "How-to"6) is presented to estimate all residuals with respect to the
same pre-motion position (workaround does not required RotDev).Results
Motion reproducibility
The five motions performed freehanded resulted in (178.58±1.21)° rotations. The orientation of the rotation axis differed on average 1.36°
between the repeated motions. With the RotDev, the sequence estimated all
rotations as exactly 180.0° with identical rotation axes.
Cross-calibration: freehand vs rotation device
Starting from the same initial calibration, nine calibration
steps were performed freehanded and with the RotDev, respectively. As shown in
Fig.4, both methods resulted in similar transforms, except for the
y-translation. Manual rotations allow larger angles between rotation axes than
with the RotDev (fixed 30°-inclined axis), improving the algorithm’s
y-translation accuracy. The residual motion estimates in Fig.5 corroborate this
observation. For the two different test motions, residual translation was
greater with the RotDev in five out of six cases compared to the freehand
approach, while for residual rotations, the freehand approach was outperformed in four out of six
cases. Thus, the observed residuals suggest that no approach was superior to the
other with respect to the final cross-calibration. With the RotDev, the overall calibration duration was approximately
half the time required for a freehanded-performed calibration (31 min
vs. 56 min), although the set-up of the RotDev takes longer than the freehand
approach (10 min vs. 5 min).Discussion
Within the strict requirements on material and
available space, a remotely controllable rotation device with two independent
rotation axes was developed. The RotDev enables reproducible motion (precision$$$\leq$$$0.1°, equivalent to detection accuracy), ergo, outperforms the freehand approach.
Besides cross-calibration the device could be used for phantom motion during motion-corrected scanning or to
precisely change the sample-B0 field alignment, e.g. for QSM.
Freehand and RotDev resulted in similar cross-calibration
performance suggesting no considerable re-positioning error of the table
occurred during freehand calibration, and the calibration algorithm is robust
against imperfect rotations. In the future, the phantom axis of the RotDev will
be inclined further to improve y-translation calibration.
In summary, with the RotDev cross-calibrations can be
performed faster, easier, and motions are highly reproducible with similar
cross-calibration performace compared to very experienced users. Thus, less
experienced users might be able to get better calibration results, hence,
lowering the learning process to perform a cross-calibration successfully. With
an increase rotation axis inclination, the accuracy of the calibration could be
further improved.Conclusion
The low-cost RotDev (publicly available CAD-model4) enables highly reproducible phantom
rotations, prevents table movement or the need to move the phantom manually
from inside the scanner during the calibration, reduces the overall calibration
duration, and provides similar calibration performance compared to the freehand
approach done by an expert.Acknowledgements
This work was supported by the NIH, grant number
1R01-DA021146.References
1. Stucht D, Danishad KA, Schulze P, Godenschweger F, Zaitsev
M, Speck O. Highest Resolution In Vivo Human Brain MRI Using Prospective Motion
Correction. PLoS ONE. 2015;10(7):e0133921. doi: 10.1371/journal.pone.0133921.
2. Zaitsev M, Dold C, Sakas G, Hennig J, Speck O. Magnetic
resonance imaging of freely moving objects: prospective real-time motion
correction using an external optical motion tracking system. Neuroimage.
2006;31(3):1038–1050. doi: 10.1016/j.neuroimage.2006.01.039.
3. Zahneisen B, Keating B, Ernst T. Propagation of
calibration errors in prospective motion correction using external tracking.
Magn Reson Med. 2014;72(2):381–388. doi: 10.1002/mrm.24943.
4. http://www.bmmr.ovgu.de/RotDev.html
5. Odenbach R, Thoma N, Mattern H, Friebe M. Remotely
controllable phantom rotation system for ultra-high field MRI to improve Cross
Calibration. Current Directions in Biomedical Engineering. 2019;5(1):429–431
doi: 10.1515/cdbme-2019-1570538325.
6. http://www.bmmr.ovgu.de/CCC.html