Mehdi Sadighi1, Mert Şişman1, Berk Can Açıkgöz1, and B. Murat Eyüboğlu1
1Electrical and Electronics Engineering Dept., Middle East Technical University (METU), Ankara, Turkey
Synopsis
Diffusion
Tensor Magnetic Resonance Electrical Impedance Tomography (DT-MREIT) is an
imaging technique providing low-frequency conductivity tensor images. In all
DT-MREIT applications in the literature two linearly independent current
injection patterns are used to reconstruct the extra-cellular conductivity and
diffusivity ratio (ECDR) which is the space-dependent scale factor between the conductivity and diffusion tensors in a porous medium. In this study, a new approach is
proposed to reconstruct ECDR using only one current
injection pattern. The proposed method is evaluated using simulated
measurements with different SNR levels. The obtained results show similar
performance compared to the conventional two current DT-MREIT.
INTRODUCTION
The electrical properties of biological tissues may vary depending on the
anatomical structure or physiological state of tissues1,2. Conductivity images create a unique
contrast including information which is not found in other imaging modalities. DT-MREIT
is an imaging modality used to image the low-frequency anisotropic conductivity
distribution biological tissues3,4,5. In this method the linear
relationship between the diffusion $$$(\overline{\overline{D}})$$$ and conductivity $$$(\overline{\overline{C}})$$$ tensors in a porous medium is exploited:
$$\overline{\overline{C}}=\eta\overline{\overline{D}}\space\space\space\space\space\space\space\space\space\space(1)$$
Where $$$\eta$$$ is the
extra-cellular conductivity and diffusivity ratio (ECDR). In almost all of the
DT-MREIT applications in the literature two current injection patterns are used
to reconstruct $$$\eta$$$. In this study, a new approach is proposed to reconstruct $$$\eta$$$ using only a single
current injection.
METHODS
To
reconstruct $$$\eta$$$ distribution,
electrical current is injected to the imaging medium. The resultant current
density distribution $$$\overline{J}$$$ for each pixel is
given by:
$${\overline{J_{i}}}=-\overline{\overline{C}}{\nabla\phi_i}=-\eta\overline{\overline{D}}{\nabla\phi_i}\space\space\space\space\space\space\space\space\space\space(2)$$
where $$$i$$$ represents the $$$i^{th}$$$ current injection
profile and $$$\phi_i$$$ is the scalar electrical potential
corresponding to $$$\overline{J}_{i}$$$. The curl-free condition of the electric field at low
frequencies3 results in:
$$\tilde{\nabla}\times(\overline{\overline{D}}\space^{-1}{\overline{J}_{i}})=\tilde{\nabla}ln(\eta)\times(\overline{\overline{D}}\space^{-1}\overline{J}_i)\space\space\space\space\space\space\space\space\space\space(3)$$
where $$$\tilde{\nabla}=(\frac{\partial}{\partial{x}},\frac{\partial}{\partial{y}})$$$. For two linearly independent current
injection profiles, Eq.3 can be expressed for each pixel as:
$$\begin{bmatrix}(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_y&-(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_x\\(\overline{\overline{D}}\space^{-1}{\overline{J}_{2}})_y&-(\overline{\overline{D}}\space^{-1}{\overline{J}_{2}})_x\end{bmatrix}_{2\times2}\begin{bmatrix}\frac{\partial{ln(\eta)}}{\partial{x}}\\\frac{\partial{ln(\eta)}}{\partial{y}}\end{bmatrix}_{2\times1}=\begin{bmatrix}\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_x}{\partial{y}}-\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_y}{\partial{x}}\\\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{2}})_x}{\partial{y}}-\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{2}})_y}{\partial{x}}\end{bmatrix}_{2\times1}\space\space\space\space\space\space\space\space\space\space(4)$$
By solving Eq.4, $$$\tilde{\nabla}ln(\eta)$$$ is obtained. To recover $$$\eta$$$ from $$$\tilde{\nabla}ln(\eta)$$$, two iterative methods have been proposed in, 3,5.
To
reconstruct $$$\eta$$$ using a single current
injection, first-order discrete approximations of $$$x$$$ and $$$y$$$ gradient operators i.e., $$$\overline{\overline{\delta}}_x$$$ and $$$\overline{\overline{\delta}}_y$$$6,7 are utilized. For single current injection Eq.4 can be expressed as:
$$\begin{bmatrix}(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_y&-(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_x\end{bmatrix}_{1\times2}\begin{bmatrix}\frac{\partial{ln(\eta)}}{\partial{x}}\\\frac{\partial{ln(\eta)}}{\partial{y}}\end{bmatrix}_{2\times1}=\begin{bmatrix}\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_x}{\partial{y}}&-\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_y}{\partial{x}}\end{bmatrix}_{1\times1}\space\space\space\space\space\space\space\space\space\space(5)$$
By expanding Eq.5 for
the entire imaged slice with $$$N$$$ pixels we have:
$$\overline{\overline{A}}_{N\times{N}}ln(\overline{\eta})_{N\times1}=\overline{c}_{N\times1}\space\space\space\space\space\space\space\space\space\space(6)$$
where
$$\overline{\overline{A}}=diag(\overline{a}_1)\overline{\overline{\delta}}_x+diag(\overline{a}_2)\overline{\overline{\delta}}_y,\\\overline{a}_1=\begin{bmatrix}(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_{y,1}\\\vdots\\(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_{y,N}{}\end{bmatrix}_{N\times1},\space\space\space\space\space\overline{a}_2=\begin{bmatrix}(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_{x,1}\\\vdots\\(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_{x,N}{}\end{bmatrix}_{N\times1},\\\overline{c}=\begin{bmatrix}{(\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_x}{\partial{y}}-\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_y}{\partial{x}})_1}\\\vdots\\{(\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_x}{\partial{y}}-\frac{\partial(\overline{\overline{D}}\space^{-1}{\overline{J}_{1}})_y}{\partial{x}})_N}{}\end{bmatrix}_{N\times1}\space\space\space\space\space\space\space\space\space\space(7)$$
and $$$diag(\overline{v})$$$ returns a square
diagonal matrix with $$$\overline{v}$$$ as the main
diagonal. In Eq.6, $$$\overline{\eta}$$$ is the vector composed of
scalar $$$\eta$$$ values of all pixels in
the imaged slice. Each entry of $$$\overline{a}_1$$$, $$$\overline{a}_2$$$ and $$$\overline{c}$$$ are obtained from a single
pixel in the imaged slice. To solve Eq.7, Tikhonov regularized least squares
solution is used with L-curve to choose regularization parameter8.RESULTS
The
performance of the proposed method is evaluated using simulated data for
different SNR levels and the results are compared to method with two current
injections in, 3.
A
FE model is constructed using COMSOL Multiphysics 5.1 (COMSOL AB, Sweden) as
shown in Fig.1(a-b). Anisotropic conductivity and diffusion values of the FE
model are given in Fig.1(c).
The diagonal components
of the reconstructed conductivity tensor using two current injections (method
in, 3 implemented in, 9)
and a single current injection (the proposed method) for $$$SNR=\infty$$$, $$$SNR=40dB$$$ and $$$SNR=34dB$$$ are given in Fig.2-4,
respectively. To produce noisy data, White Gaussian Noise is added to the
diffusion and current density data. The RMSE values (%) of the reconstructed diagonal
conductivity distributions for different regions of the FE model and for different levels are given in Table 1. The RMSE values (%) are calculated as:
$$RMSE(\%)=\sqrt{\frac{1}{N}\sum_{j=1}^N\frac{(c_t^j-c_r^j)^2}{(c_t^j)^2}}\times100\space\space\space\space\space\space\space\space\space\space(8)$$
where $$$c_t^j$$$ and $$$c_r^j$$$ are the true and reconstructed
conductivity values of the $$$j^{th}$$$ pixel, respectively. $$$N$$$ is the total number of
pixels for each inhomogeneity object and the background of the FE model in
Fig.1. DISCUSSION
Considering
the reconstructed images in Fig.2-4 and the RMSE values in Table 1, it is seen
that the proposed method using a single current injection provides similar
performance with the method using dual current injections in, 3. This
similarity is expected since the two unknowns in Eq.4 are just the partial derivatives
of ECDR in the $$$x$$$ and $$$y$$$ directions. Therefore, by approximating $$$x$$$ and $$$y$$$ gradient operators with
$$$\overline{\overline{\delta}}_x$$$ and $$$\overline{\overline{\delta}}_y$$$ the problem in Eq.4
reduces to a problem with a single unknown in Eq.5. The proposed method is quite successful
in dealing with noisy data reconstruction. As it is seen in Fig.3-4, the corner
regions of the reconstructed conductivity images using the dual current
injection method in, 3 are erroneous. These artifacts occur at corner
regions where the current density becomes comparable with the noise level. This
shows the increased vulnerability of the two current method in, 3 to the
added noise in comparison with the proposed method with a single current
injection. Although the proposed method provides better contrast images, the
reconstructed background conductivity (with isotropic distribution) is slightly
higher than true values with a scale factor. Considering Table 1, the proposed
method shows superior performance in regions with anisotropic conductivity distribution
even though only one current is injected. Besides reducing the total scan time to half, the proposed method provides
a great advantage when more than one current injection is not possible due to various
reasons such as patient condition.CONCLUSION
In this study, a new approach is proposed for DT-MREIT to reconstruct the
conductivity tensor images using only a single current injection. The RMSE
values of the reconstructed anisotropic conductivities for $$$SNR=\infty$$$ are around 3%. Hence,
the proposed method has superior performance though only one current injection
is used. Moreover, the RMSE values of the reconstructed anisotropic
conductivities for experimental SNR levels ($$$SNR=34dB$$$) are around 5%
which shows high insensitivity of the proposed method to the additive noise. Therefore,
the clinical practicality of DT-MREIT can be enhanced by the reduction of current
injection patterns without any deterioration of the obtained results.Acknowledgements
This work is a part of the Ph.D. thesis study of Mehdi Sadighi. B. Murat Eyüboğlu is the thesis supervisor. Mert Şişman and Berk Can Açıkgöz are graduate students under the supervision of B. Murat Eyüboğlu.
This study is funded by The Scientific and Technological Research Council of Turkey (TÜBİTAK) under Research Grant 116E157.
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