Juuso Heikki Jalmari Ketola1, Satu Irene Inkinen1, Jaro Karppinen2, Jaakko Niinimäki1,2,3, Osmo Tervonen1,2,3, and Miika Tapio Nieminen1,2,3
1Research Unit of Medical Imaging, Physics and Technology, University of Oulu, Oulu, Finland, 2Medical Research Center, University of Oulu and Oulu University Hospital, Oulu, Finland, 3Department of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland
Synopsis
We applied texture analysis to T2-weighted MRI of the
lumbar spine in a population-based sample. The extracted features were used in
a logistic regression pipeline to predict whether the subjects (N=200) suffered from clinically relevant
low back pain. Best results were obtained by combining features from
intervertebral discs and vertebrae with receiver operating characteristics area
under curve of 0.86, accuracy of 0.84, and recall of 0.83. This preliminary
work shows that texture analysis and machine learning may be used to predict
pain from T2-weighted images. Thus, a connection between MRI textural features
and clinically relevant low back pain may exist.
Introduction
Low back pain (LBP) is very common worldwide. As many
as 70–85% of adults have been estimated to suffer from it at some point in
their lives1. For most (ca.
90%) of patients with LBP, no specific cause for pain can be demonstrated. LBP
may result from an injury or degenerative process of the lumbar innervated
tissues such as facet joints, intervertebral discs (IVDs), ligaments, or
muscles. Magnetic resonance imaging (MRI) shows degenerative changes in
vertebrae and IVDs of which some have been associated with the severity of LBP2. However, these
findings are common in the asymptomatic population as well, and thus may not be
representative of clinical symptoms3,4. Therefore, our
study aims to use texture analysis and machine learning methods to find representative
features that could predict the presence of LBP from T2-weighted MRI.Methods
Mid-sagittal slices (N = 200) of T2-weighted MRI scans of the lumbar spine along with tabular data containing information about LBP frequency and intensity (scale from 0-10) of Northern Finland Birth Cohort 1966 participants were used in this study. Imaging was done at 1.5 T with a fast spin echo sequence (TE = 112.7 ms, TR = 3500 ms, ETL = 27, slice thickness = 4 mm, matrix size = 512x512, FOV = 280x280 mm2). Based on the pain characteristics at the time of imaging, two groups were formed: subjects with clinically relevant pain (frequency ≥ 30 days and intensity ≥ 6), and no pain (others). Separate regions-of-interest (ROIs) containing the lumbar IVDs and vertebrae were segmented from the images manually (Figure 1). A custom MATLAB (R2019b) script was then used to extract the following textural features from the ROIs in various directions (where applicable): histogram features, gradient features, gray-scale co-occurrence matrix, run-length encoding matrix, wavelet features, autoregressive model parameters, and local binary patterns. In total, 603 textural features were extracted.
Sklearn (v. 0.21.2) machine learning library was used in
Python (v. 3.7.3) to build a machine learning pipeline to analyze the feature
data. Data were split into training (80%) and test (20%) sets making sure they
have the same class distribution. A false-positive-rate test was used to reduce
dimensionality by keeping only features testing for p-value below 0.05. A
logistic regression classifier was then implemented to predict whether the
subject LBP or not. A 5-fold stratified cross-validation scheme was used in
conjunction with a grid-search to tune the amount of L2 regularization
in the classifier. The best performing parameters were then used for final
classification task. This analysis was done separately for IVD features and
vertebral features, and for a combination of both.Results
The feature reduction algorithm reduced the
feature space to 19 IVD features and 22 vertebral features. When using only IVD
features, a receiver operating characteristic area under curve (ROC-AUC) of
0.84, accuracy of 0.82, and recall of 0.83 were observed in the test set. For vertebral
features only, the corresponding metrics were ROC-AUC = 0.64, accuracy = 0.63,
and recall = 0.55. When vertebral and IVD features were combined, the corresponding
metrics increased to ROC-AUC = 0.86, accuracy = 0.84, and recall = 0.83. The
receiver operating characteristic curves are shown in Figure 2. The receiver
operating characteristics for the training and test sets were similar, and
therefore our model did not overfit to training data.Discussion
The results heavily suggest that IVD features have
more relevance in predicting clinically relevant LBP. Using only vertebral
features resulted in inferior classifier performance. Furthermore, combining
features from both ROIs only slightly increased performance when compared to
using IVD features only. Indeed, a recent genetic study has shown strongly
statistically significant genetic correlation between IVD problems and back
pain5.
While our results show promise in using texture analysis
and machine learning in predicting pain from T2-weighted images, further
investigations are required. Specifically, we aim to increase the amount of
analyzed data considerably to ensure good generalization, and to investigate
deep learning approaches. In addition, using more MRI contrasts such as T1 or
short-TI inversion recovery (fat suppression) and combining imaging phenotypes
such as Modic of Pfirrmann scoring with textural features could further improve
the results.Conclusion
This preliminary work shows that texture
analysis combined with a logistic regression classifier pipeline may be used to
predict pain from T2-weighted MR images. Thus, there may be a connection between
quantitative MRI features and clinical symptoms in LBP. Acknowledgements
Support from Technology Industries of Finland Centennial Foundation and Jane and Aatos Erkko Foundation is gratefully acknowledged.References
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