Stefanie Eriksson1, Hanna Hebelka2,3, Leif Torén2,3, Christian Waldenberg2, Helena Brisby2, and Kerstin Lagerstrand1,4
1Medical Physics and Biomedical Engineering, Sahlgrenska University Hospital, Gothenburg, Sweden, 2Institute of Clinical Sciences, Gothenburg University, Gothenburg, Sweden, 3Department of Radiology, Sahlgrenska University Hospital, Gothenburg, Sweden, 4Institute of Clinical Scences, Gothenburg University, Gothenburg, Sweden
Synopsis
Texture analysis provides quantitative image analysis based on mathematically calculated features. A high number of features calculated with texture analysis showed to be significantly different between the intervertebral discs with and without annular fissuring that had been classified from CT discograms. When the features based on T2-weighted images were used for classification by "Random Forest" a very high accuracy in differentiating between discs with and without annular fissuring was achieved.
Introduction
Low back pain (LBP) constitutes one
of the main contributing factors to disability and absence from work in
industrialized countries. Annular fissures in intervertebral discs (IVDs) has
been associated with (LBP). Conventional Magnetic Resonance Imaging (MRI) has
been shown to depict degenerative IVD changes. However, these imaging findings
neither correlate with clinical symptoms, nor do they consistently predict the
risk of LBP.1,2 From CT discograms annular fissuring
can be imaged and graded as the injected contrast, leaks out of the nucleus
pulposus into the fissures in the annulus.
Texture analysis (TA) provides quantitative
image analysis based on mathematically calculated features. TA has been able to
extract image biomarkers that can be used to differentiate pathologies from
healthy tissues in an automated way.
The purpose of this study was to use
texture analysis of T2-weighted MRI of IVDs and use the calculate features to
differentiate between IVDs with and without annular fissuring.Methods
30 LBP
patients examined with both MRI and CT discograms were included in this study.
T2-weighted sagittal MR images (0.6mm×0.6 mm pixel size, 4 mm slice thickness, TR=4ms,TE=124ms) of the
spine were acquired on a 1.5 T system (Siemens Magnetom Symphony Maestro
Class, Erlangen, Germany). IVDs were manually segmented in the 5 most
parasagittal slices of the T2-weighted images using an in-house program based
on MatLab (R2018b, Mathworks, Natick, Massachusetts, U.S.A.).
CT discograms
were classified according to the Dallas Discogram Description (DDD) and Adams
classification, and then digitomized into annular fissures involving
the outer
annulus or not, i.e. DDD≥2/DDD≤1 respectively Adams≥D/Adams≤C. A total
of 81 IVDs where included in the study, of which 16 discs (group 1) had no
fissuring in the outer annulus and 65 discs (group 2) had fissuring in the
outer annulus.
Texture
analysis was performed on the segmented discs using the radiomics calculator
tool, RaCaT (version 1.4).3 Nifti-files of the MR-images and of the regions of interest (ROIs) was used by RaCaT. Discretisation
of the grey levels was done using a fixed number of 64 bins for the texture
features and intensity histogram features. For intensity volume histograms a
fixed number of 1000 bins were used for discretisation. The calculated feature values provided by
RaCaT was used in a "Random Forest" classifier, which extracted the
most important features for classification. The multiparametric analysis was
performed using Anaconda with the Python distribution (Anaconda Software
Distribution. Computer software. Vers. 2-2.4.0. Anaconda, Nov. 2016).
Supervised “Decision Tree” Machine Learning was used to examine how well the
included features classified between groups.
A 10-fold cross validation was used for model derivation and the supervised classifiers
was applied to the remaining third of data in a separate data file containing
unseen data.Results
Table 1
shows the feature families and number of different features in each family
provided by RaCat. For each feature there was up to 6 different aggregation
methods resulting in a total of 480 calculated feature values. A two-sided Wilcoxon rank sum test
was used to determine which features gave significantly different values between
the two groups. By using a Bonferroni corrected p-value of p=0.0003, 169 features were determined statically
significant.
All 480 features were used in the
multiparametric analysis. From the analysis 40 features with highest importance was selected for classification. Six of these features were manually removed
since they showed to be duplicates giving the exact same results as one or more
of the other selected features. The 34 remaining features are shown in table 2,
also showing the mean feature value and standard deviation for the two group. The
calculated p-value for the difference in features values between the groups are also shown.
Figure 1 shows the evaluation of the
“Decision Tree” algorithm for classification of annular fissuring (same results for DDD and Adams). Corresponding “Decision Tree” is
shown in Figure 2. The algorithm classified IVDs
with fissures involving the outer annulus with high accuracy and precision
using only two features. Results from the cross validations
showed high reproducibility for the classification of annular fissures
with mean: 0.886 (std: 0.091).Discussion
The features used in the “Decision Tree”
were the Neighbouring grey level dependence based feature “High dependence high
grey level emphases” and the Neighbourhood grey tone difference based feature “Busyness”, shown in figure 2. “High dependence high
grey level emphases” suggests that discs with no annular fissures have more areas with high
grey levels and at the same time high homogeneity of signal value. The second
feature “Busyness” show higher values for the group of discs with annular
fissures, which suggests that these IVDs contain textures with large changes in
grey levels between neighbouring voxels, i.e. discs with annular fissures are
more heterogeneous in signal intensity. Conclusion
This study shows that TA based
on MRI can be used to non-invasively detect annular fissures objectively and
quantitatively and thus has potential to be a valuable tool within LBP research.Acknowledgements
No acknowledgement found.References
1. Doniselli et al. Eur Spine J 2018;27(11):2781-2790
2. Vagaska et al. Medicine (Baltimore) 2019;98(17):e15377.
3. Pfaehler et al PLoS ONE
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