Maksym Sharma1, Andrew R. Westcott1, Aaron Fenster1, David G. McCormack2, and Grace Parraga3
1Department of Medical Biophysics, Western University, London, ON, Canada, 2Department of Medicine, Western University, London, ON, Canada, 3Department of Medical Biophysics, Department of Medicine, Western University, London, ON, Canada
Synopsis
Hyperpolarized-gas-MRI provides a
way to measure lung ventilation in patients with chronic obstructive pulmonary disease
(COPD) in whom progressive worsening of expiratory airflow occurs over time. Progression
of COPD is believed to stem from airway wall and lumen changes, airway
remodeling or obliteration and emphysema. Our objective was to test machine-learning
algorithms trained on hyperpolarized 3He MRI for predicting clinically-relevant
FEV1 changes. Novel 3-dimensional
adaptations of gray-level run-length-matrices, gap-length-matrices,
zone-size-matrices and co-occurrence-matrices were used for feature extraction
which lead to the identification of features that predicted changes in airflow
limitation (∆FEV1%pred>5%) over a 2.5-year time-period in
at-risk and COPD ex-smokers.
INTRODUCTION:
Hyperpolarized gas
magnetic-resonance-imaging (MRI) provides a way to measure ventilation and
perfusion abnormalities that stem from abnormalities in the large and small
airways and emphysema.1 In patients with chronic
obstructive pulmonary disease (COPD), progressively worse expiratory airflow
occurs over time and is believed to stem from progressively worse airway wall
and lumen microstructure, or airway remodeling and emphysematous abnormalities
in the lung parenchyma.2 While the forced expiratory flow
in 1s (FEV1) is easily measured, it cannot provide spatial nor
functional information about the small airways, which are believed to drive
COPD pathogenesis. Predictive models of COPD progression are usually based on
clinical characteristics or quantitative information from computed tomography
(CT)3 and to-date none include MRI-derived
measurements.4 To address
this gap, we aimed to evaluate progressive airflow limitation in at-risk and
COPD ex-smokers based on their minimal clinically
important difference (MCID) for FEV1 using MRI texture features and
machine-learning. The generalizability of the extracted features was tested by
comparing the accuracy of single and ensemble classifiers. We hypothesized that
hyperpolarized gas MRI measurements, machine-learning and multivariate
modelling could be combined to sensitively and specifically predict changes in
airflow limitations over ~2.5 years.METHODS:
Data Acquisition:
In this retrospective study,
at-risk and COPD ex-smokers provided written-informed-consent to an approved
research protocol and underwent hyperpolarized 3He MRI and
spirometry measurements. MRI was performed on a whole body 3.0 Tesla Discovery
MR750 (GE Health Care, Milwaukee, WI) with broadband imaging capability at
baseline and 2.5 years later, as previously described.5
Ground-truth change in airflow limitation was defined as a change in FEV1%pred greater
than 5% at follow-up. 3He gas was polarized to 30–40%
(HeliSpin) and doses (5 ml/kg body weight) were administered in 1.0 L Tedlar
bags diluted with medical grade nitrogen. 3He MRI,
ventilation images were acquired using FGRE sequence with a partial echo
(10 s data
acquisition, TR/TE/flip angle = 3.8 ms/1.0 ms/7°, [FOV] = 40 × 40 cm, matrix 128 × 128, slices 15-17, slice thickness 15 mm,
with 0 gap) with and without additional diffusion sensitization with b=1.6
s/cm2 (gradient amplitude (G)=1.94 G/cm, rise and fall time=0.5 ms, gradient
duration=0.46 ms, diffusion time=1.46 ms) during inspiratory breath-hold of a 1
L volume of 3He/N2 mixture.6
Data Analysis:
We evaluated first-order texture
features including mean, standard deviation, and skewness; ventilation-defect-percent
(VDP) measurements were generated as previously described.7 A custom-built algorithm was used
to extract ventilation-defect-cluster-percent (VDCP), low ventilation clusters
(LVC) and cluster defect diameter voxel size one (CDD1) measurements. Other algorithm
inputs were extracted from novel 3-dimensional extensions of gray-level
run-length-matrices (RLM), gap-length-matrices (GLM), zone-size-matrices (ZSM)
and co-occurrence-matrices (GLCM).8 Eleven features were extracted from each of RLM, GLM and ZSM. These account for
most of the grey-level information provided by extracting all the gaps and runs
with same directionality and angles. Extracted GLCM features were contrast, entropy
and homogeneity. Participant
demographics and features were evaluated using parametric and non-parametric
t-tests with Holm-Bonferroni correction. The performance of specific models was
evaluated using area-under-the-receiver-operator-curve (AUC), sensitivity and
specificity values. Participants were dichotomized as stable or > 5% change
in FEV1 at follow-up and then randomly assigned to a 70% training and
a 30% testing data-set with five-fold cross validation.RESULTS:
We evaluated 80 ex-smokers including
50 participants with and 30 participants without COPD at baseline and at 30±8-months
later. Fourteen participants with COPD and 6 participants without COPD reported
a change in FEV1 that exceeded the minimal clinically important
difference at follow-up. Table 1 provides
the features and accuracies of the machine-learning algorithms. Ensemble
outperformed single classifiers, with RUSBoosted trees algorithm providing 79%
accuracy and 100% specificity. Multi-variate modelling revealed that CDD1, SRE,
SRLGE and RLN texture features significantly predicted a clinically-relevant
change in FEV1. Figure 1 shows the relationship of the strongest
predictor (CDD1) and VDP with the change in FEV1 that was measured
at follow-up.DISCUSSION:
We evaluated 42 texture features derived from hyperpolarized 3He
MRI using machine-learning algorithms to predict changes in FEV1 at
follow-up. The test accuracy of the models was moderate, but the specificity
remained high, which highlights the potential of extracting strong predictors
from hyperpolarized gas MRI. CDD1 reflects the
cumulative number of defect clusters of one voxel (5x5x5mm3) and
this extracted feature significantly correlated with changes in FEV1 at
follow-up. While SRE, SRLGE and RLN measure the overall texture and
distribution of various runs, SRLGE (p=0.048) captures short-runs of low
gray-levels and significantly correlated with the changes in FEV1
measurements. A quarter of ex-smokers had significant changes in airflow
limitations with ∆FEV1%pred >5% within ~2.5 years’
time period, and this was detected using machine-learning and texture analysis.
Few classifiers had high-test accuracy but the results were biased towards favouring
the larger class because all the test subjects were classified as stable.CONCLUSION:
Hyperpolarized 3He MRI measurements, supervised machine-learning
and multivariate modelling can be used together to reveal the determinants of significant
changes in airflow limitation after 2.5 years. Yes! Hyperpolarized gas MRI and machine
learning does predict clinically-relevant changes in FEV1 in
ex-smokers with and without COPD.Acknowledgements
No acknowledgement found.References
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8) Depeursinge, A et al. Biomedical texture analysis. Acad Press (2017).