Zechen Zhou1, Zhensen Chen2, Jie Sun2, Niranjan Balu2, Baocheng Chu2, Peter Börnert3, Thomas S Hatsukami2, and Chun Yuan2
1Philips Research North America, Cambridge, MA, United States, 2Department of Radiology, University of Washington, Seattle, WA, United States, 3Philips Research Hamburg, Hamburg, Germany
Synopsis
Three-dimensional (3D)
T1 weighted (T1w) turbo spin echo (TSE) sequence has demonstrated its value for
intracranial vessel wall imaging (IVWI), but its long scan time has hampered
wider clinical translation. In this study, a 4-minute 3D T1w TSE sequence was
optimized and combined with wave encoded parallel imaging and compressed
sensing (PI-CS) reconstruction for whole brain isotropic 0.6mm IVWI. This approach
improved the image quality and robustness of IVWI in comparison to the
Cartesian encoded PI-CS approach in healthy subjects. It demonstrated promising
potential for further clinical evaluation.
Introduction
Three-dimensional (3D)
T1 weighted (T1w) turbo spin echo (TSE) sequence with variable flip angle (VFA)
refocusing pulse train has become the most preferable technique for whole brain
high resolution intracranial vessel wall imaging (IVWI) at 3T, where various
optimizations have been applied to improve signal-to-noise ratio (SNR), point
spread function (PSF) and image contrast1-5. However, its wider
clinical translation remains hampered by the long scan time. Some recent
studies6,7 have demonstrated that parallel imaging and compressed
sensing (PI-CS) can effectively reduce the IVWI scan time to 5~6 minutes. In
addition, wave encoding8 as a subsampled artifacts smearing
technique has shown its improved PI performance by more properly using the
entire 3D spatial encoding power of multi-channel coil sensitivities. In this
study, the 3D T1w TSE sequence is further optimized and accelerated with the wave
encoded PI-CS to achieve whole brain 0.6mm isotropic IVWI in 4 minutes. This
approach is compared with the Cartesian encoded PI-CS and its feasibility is
demonstrated by healthy volunteer scans.Methods
Sequence Optimization
The sequence diagram
of optimized T1w 3D TSE is shown in figure 1. To improve the SNR, a VFA design
strategy to achieve low-pass filtering shaped PSF profile was exploited and the
echo time was minimized without skipping any TSE echoes9,10. DANTE
pre-pulse11,12 was applied to improve flow
suppression. Also, the anti-drive tip-down pulse3,4 was used
at the end of TSE pulse train to improve T1 contrast. The data acquisition
of this sequence was implemented with Cartesian and wave encoding separately
for comparison. For wave encoding, a variable frequency wave encoding scheme13
(figure 1b&c) was performed to improve the aliasing propagation property
along the readout direction, while reducing the eddy current induced slice
profile imperfection.
Image Reconstruction
The central k-space
area of 20x20 was fully sampled to calibrate the coil sensitivities (and wave
PSF for wave encoding). A recently developed subspace-based wave encoding self-calibration
approach14 was used with an additional k-space trajectory symmetric
constraint to stabilize the wave PSF calibration. Coil sensitivities were
estimated by an auto-calibration method15,16. The L1-wavelet
regularized SENSE framework was used to reconstruct the image: $$\min_{x}\frac{1}{2}\parallel{y-PF_{yz}PsfF_{x}Sx}\parallel_2^2+\lambda\parallel{Wx}\parallel_{1}.$$ Here $$$x$$$ is the
to-be-reconstructed image, $$$y$$$ represents
the acquired k-space samples, $$$F_{x}/F_{yz}$$$ represents
the Fourier transform operator along x direction or within y-z plane, $$$S$$$ is the
sensitivity map, $$$Psf$$$ stands for
the wave PSF (an identity matrix for Cartesian encoding), $$$P$$$ denotes the
undersampling mask, $$$W$$$ indicates the
wavelet transform, and $$$\lambda$$$ is the regularization weight (set to 0.1 in this work). Coil compression17 was applied before the
calibration and reconstruction to improve the overall computational efficiency
with 9 virtual coils.
MR scans
The
Cartesian and wave encoded sagittal 3D T1w TSE datasets were acquired by a
32-channel head coil on a Philips Ingenia 3.0T scanner using the following
parameters: FOV (FHxAPxRL) = 230x230x200mm3,
resolution = 0.6x0.6x0.6mm3, TE/TR = 4.9ms/800ms, TSE factor = 40, 100
of 1.5ms DANTE units with flip angle of 12deg, adiabatic spectral fat
suppression. A poisson-disc variable density random sampling was prospectively applied
to accelerate the scan by 8.5 fold and achieve a 4-minute IVWI protocol. For
wave encoding, a maximum wave encoding gradient strength of 15mT/m was used to
improve the aliasing propagation along the readout direction, while decreasing the
number of cycles to 2 for slew rate reduction.Results
Figure 2 shows one
example comparing reconstructed images between Cartesian and wave encoding.
Wave encoding provided overall less noise amplification and improved image
quality at such a high acceleration factor scenario. In particular, the basilar
artery vessel wall can be better preserved on the wave encoded reconstruction
result as shown by the zoom-in regions. Figure 3 compares the curved planar
reconstruction images of bilateral cerebral arteries between Cartesian and wave
encoded reconstruction results. Both imaging methods showed sufficient flow
suppression from internal carotid arteries to middle cerebral arteries. With
wave encoding, the vessel wall of middle cerebral arteries can be more stably
delineated.Discussion and Conclusion
Wave encoding enables
additional improvement of PI-CS so that the small and deep intracranial vessels
can be more accurately and stably restored in highly accelerated IVWI. To rapidly
reconstruct such huge datasets (high resolution, large coverage, and many coil channels),
coil compression would be critical to reduce memory and time consumption, which
however may limit the PI performance. This experiment demonstrated that wave
encoding can mitigate such limitation by taking better usage of the entire 3D coil
sensitivity encoding power. This 4-minute 3D T1w whole brain 0.6mm isotropic
IVWI with wave encoded PI-CS reconstruction has demonstrated promising results in healthy subjects. Further evaluation on patients is warranted for
clinical translation.Acknowledgements
This
study was supported in part by the grant from National Institutes of Health (R01NS092207).References
1. Qiao Y, Steinman DA, Qin Q, Etesami M,
Schär M, Astor BC, Wasserman BA. Intracranial arterial wall imaging
using three-dimensional high isotropic resolution black blood MRI at 3.0 Tesla.
J Magn Reson Imaging. 2011;34(1):22-30.
2. Qiao Y, Steinman DA, Qin Q, Etesami M,
Schär M, Astor BC, Wasserman BA. Intracranial plaque enhancement in
patients with cerebrovascular events on high-spatial-resolution MR images.
Radiology. 2014;271(2):534-42.
3. Yang
H, Zhang X, Qin Q, Liu L, Wasserman BA, Qiao Y. Improved cerebrospinal fluid
suppression for intracranial vessel wall MRI. J Magn Reson Imaging.
2016;44(3):665-72.
4. Fan
Z, Yang Q, Deng Z, Li Y, Bi X, Song S, Li D. Whole-brain intracranial vessel
wall imaging at 3 Tesla using cerebrospinal fluid-attenuated T1-weighted 3D
turbo spin echo. Magn Reson Med. 2017;77(3):1142-1150.
5. Yang
Q, Deng Z, Bi X, Song SS, Schlick KH, Gonzalez NR, Li D, Fan Z. Whole-brain
vessel wall MRI: A parameter tune-up solution to improve the scan efficiency of
three-dimensional variable flip-angle turbo spin-echo. J Magn Reson Imaging.
2017;46(3):751-757.
6. Zhu
C, Tian B, Chen L, Eisenmenger L, Raithel E, Forman C, Ahn S, Laub G, Liu Q, Lu
J, Liu J, Hess C, Saloner D. Accelerated whole brain intracranial vessel wall
imaging using black blood fast spin echo with compressed sensing (CS-SPACE).
MAGMA. 2018;31(3):457-467.
7. Jia
S, Zhang L, Ren L, Qi Y, Ly J, Zhang N, Li Y, Liu X, Zheng H, Liang D, Chung YC.
Joint intracranial and carotid vessel wall imaging in 5 minutes using
compressed sensing accelerated DANTE-SPACE. Eur Radiol. 2019 Aug 1. Epub.
8. Bilgic
B, Gagoski BA, Cauley SF, Fan AP, Polimeni JR, Grant PE, Wald LL, Setsompop K.
Wave-CAIPI for highly accelerated 3D imaging. Magn Reson Med.
2015;73(6):2152-62.
9. Zhou
Z, Chen S, Wu J, Börnert P, Yuan C. Deep Convolutional Neural Network Enhanced
3D High Resolution Turbo Spin Echo Intracranial Vessel Wall Imaging. ISMRM
2018, p1049.
10. Zhou
Z, Chu B, Sun J, Balu N, Mossa-basha M, Hatsukami TS, Börnert P, Yuan C. Highly
Accelerated Whole Brain Isotropic 0.5mm Intracranial Vessel Wall Imaging with
Nonlocal Denoising and Super Resolution Enhancement. ISMRM 2019, p3242.
11. Li
L, Miller KL, Jezzard P. DANTE-prepared pulse trains: a novel approach to
motion-sensitized and motion-suppressed quantitative magnetic resonance
imaging. Magn Reson Med. 2012;68(5):1423-38.
12. Wang
J, Helle M, Zhou Z, Börnert P, Hatsukami TS, Yuan C. Joint blood and
cerebrospinal fluid suppression for intracranial vessel wall MRI. Magn Reson
Med. 2016;75(2):831-8.
13. Zhou
Z, Chu B, Yuan C, Börnert P. Variable frequency wave-encoded 3D turbo spin echo
imaging. ISMRM 2019, p4577.
14. Zhou
Z, Yuan C, Börnert P. Self-calibrating wave-encoded 3D turbo spin echo imaging
using subspace model based autofocusing. Magn Reson Med. 2019 Oct 19. Epub.
15. Ying
L, Sheng J. Joint image reconstruction and sensitivity estimation in SENSE
(JSENSE). Magn Reson Med. 2007;57(6):1196-202.
16. Uecker
M, Hohage T, Block KT, Frahm J. Image reconstruction by regularized nonlinear
inversion-joint estimation of coil sensitivities and image content. Magn Reson
Med. 2008;60(3):674-82.
17. Zhang T, Pauly JM, Vasanawala SS, Lustig M. Coil
compression for accelerated imaging with Cartesian sampling. Magn Reson Med.
2013;69(2):571-82.