Yan Fu1, Tianjing Zhang2, Haixia Li3, Yichen Tong3, Xiangchuang Kong4, and Dingxi Liu4
1EPFL, Lausanne, Switzerland, 2Philips Healthcare, Guangzhou, China, 3Sun Yat-Sen University, Guangzhou, China, 4Radiology, Union Hospital,Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
Synopsis
In routine MRI clinical application of compressed sensing, the image quality is often not useful for diagnosis when its CS(Compressed SENSE) acceleration factor is beyond a certain level(e.g. 8 or 10). It is desirable to further accelerate MR sequences in multiple applications such as brachial plexus nerve, coronary artery, and so on. It is possible to use generative adversarial network(GAN) models to further optimize the imaging workflow by improving the image quality of data acquired with high CS factors.
Introduction
Generative adversarial network (GAN) is
now broadly applied in medical imaging [1]. Compressed sensing has attracted significant
attention in medical imaging, which reduces the acquisition time[2]. However,
high acceleration factor of compressed sensing would meanwhile compromise the
signal-to-noise ratio, affecting image quality and diagnostic performance. In
the clinic,3D contrast-enhanced nerve-view imaging provides high diagnostic
value for brachial plexus nerve trauma, tumor, and so on.However, a relatively
long acquisition time (above 10 minutes) limits its clinical application. In a
previous study, we have evaluated the image quality and capability of diagnosis
of accelerated 3D Nerve-view sequence, the images of CS factor above 8 has no
diagnosis value. The SENSE = 2 and CS factor = 4 - 20 images are well collected
as data pairs, which is very suitable for generative adversarial network
experiment design and training. Accordingly, we designed a study to validate
the feasibility of GAN models in optimizing MR images generated from CS factor
= 10.Material and Methods
In a consecutive cohort
of 35 patients with suspected disease of brachial plexus underwent MR studies.
3D Nerve-VIEW
sequences with 4 CS accelerating
factors(4,6,8,10) and a traditional 3D Nerve-view with 2-fold parallel
imaging(SENSE) as a clinical
reference were obtained on a 3.0T scanner(Ingenia CX, Best, Philips
Healthcare), 100 slices of different acceleration factors were acquired for all patients. Images were
graded by two experienced radiologists in MR neurography. The results showed that images of CS factor =10 have no diagnosis value.
However, those images with CS factor = 10 still have basic structures of brachial nerve whose image quality. Moreover, the
slice position, slice number is the same for different acceleration factors in each patient’s image acquisition, which could be
naturally used for the experiment design in a generative adversarial network. Accordingly, we designed an experiment to optimize the
image quality of CS factor = 10. From all the acquired images, images acquired with SENSE factor = 2 are the best, so we use
those images as ground truth. In our study, we used images with SENSE=2 as a discriminator, images with CS factor = 10
as a generator. A mainstream generative adversarial model: pix2pixHD is applied in our study. This model is typically used for
high-resolution image-to-image translation[3]. Original image size is 1152*1152 in Dicom format, and we randomly crop the
image into 1024*1024 then resized it into 512*512. Training epoch is 50, batch size 1 with initial learning rate 2e-4 for Adam
optimizer. The parameter for the exponential decay rate for the 1st-moment estimates is 0.5 and for the 2nd-moment estimates is
0.999. The networks are implemented in the TensorFlow and Pytorch frameworks on an NVIDIA GEFORCE RTX 1080 Ti GPU.Results
Peak signal-to-noise
ratio(PSNR) and structural similarity index(SSIM) was chosen to perform image
quality evalution[5]. The quantitative results for the two models are presented
in Table 1. As observed, relative to CS = 10 images, pix2pixHD model has an
obvious improvement in both PSNR and SSIM indexes. We also performed a blind
reader study on the images generated from 10 test patients. Two experienced
radiologists with 10 years of experience scored the images generated from the
test samples by the three methods in terms of image quality on a point scale
(1=unacceptable, 5 = best). The scoring results are shown in Table 2. It shows
that the scoring for Pix2pixHD model is better than CS = 10.To show the image
enhancement effects of the pix2pixHD networks, we took representative slices,
as shown in Fig. 1Discussion
In
this study, we mainly validate the performance of pix2pixHD model in brachial
plexus MR imaging. Our focus is on the improvement of image details. MR images
in brachial nerves with CS factor=10 could not clearly demonstrate the
structures of the brachial plexus and its surrounding tissue. Moreover, the
lesion display is not very clear either. The main reason we choose pix2pixHD
model for image enhancement and denoising is that this GAN model is typically
used for high-resolution image-to-image translation. Its primary advantage
include multi-scale generator and discriminator for high-resolution image generation;
multiple editable outputs could be generated with different input conditions.
In our task, the high-resolution image generation could enable us to figure out
more lesion details. In future, we could potentially design a cascaded GAN
model for further denoising of the generated images. From two radiologists'
perspective, our generated images enhance the signals of brachial nerves.
However, there is some extra noise included in our generated images as well.
More algorithm improvement and multicenter clinical validation are needed
before the generated images from CS = 10 can be applied in real clinical
applications.Conclusion
In
conclusion, this study innovatively applies an advanced generative adversarial
network in brachial nerve MRI. Such a method effectively improves both the
image index and subjective scoring in comparison with CS = 10 images; it also
enhances the demonstration of lesion details and nerve structures of CS = 10
images. In future, more denoising approach should be applied to make the
algorithm’s performance more satisfactory for clinical diagnosis.Acknowledgements
No acknowledgement found.References
- X. Yi, E. Walia, and P. Babyn, “Generative adversarial network in medical imaging: A review,” 2018.
- Geethanath S1, Reddy R2, Konar AS3, Imam S2, Sundaresan R4, D R RB3, Venkatesan R4."Compressed sensing MRI: a review." Crit Rev Biomed Eng. 2013;41(3):183-204.
- Ting-Chun Wang, Ming-Yu Liu, Jun-Yan Zhu, Andrew Tao, Jan Kautz1, Bryan Catanzaro,"High-Resolution Image Synthesis and Semantic Manipulation with Conditional GANs arXiv:1711.11585v2 [cs.CV] 20 Aug 2018