Mohammad Rakeen Niaz1, Yingjuan Wu1, Abdur Raquib Ridwan1, Xiaoxiao Qi1, Shengwei Zhang1, David A. Bennett2, and Konstantinos Arfanakis1,2
1Biomedical Engineering, Illinois Institute of Technology, Chicago, IL, United States, 2Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL, United States
Synopsis
A high-resolution older adult brain template
containing full diffusion tensor (DT) information has not been constructed.
Available DT templates of low spatial resolution lack fine details, and most
are not representative of the older adult brain. Both factors limit spatial
normalization accuracy in studies of aging. This work a) introduced a novel approach
for constructing a DT template with high spatial resolution based on principles
of super-resolution, and using this technique, b) developed and quantitatively
evaluated a DT template of the older adult brain with high spatial resolution
using high-quality data from 202 non-demented older adults.
Introduction
Although high spatial resolution diffusion
tensor imaging (DTI) studies of the aging human brain are on the rise, a
high-resolution older adult brain template containing full diffusion tensor information
has not been constructed. Available templates of low spatial resolution lack
fine details due to partial volume effects, and most are not representative of
the older adult brain. Both factors limit spatial normalization accuracy in
studies of aging. The purpose of this work was to a) introduce a novel approach
for constructing a DTI template with high spatial resolution based on
principles of super-resolution, and using this technique, to b) develop a DTI
template of the older adult brain with high spatial resolution using high-quality
data from 202 non-demented older adults. The new template was quantitatively
compared to available templates in terms of image quality and spatial
normalization accuracy achieved when used as reference for alignment of DTI data
from older adults.Methods
Data:
DTI data of 2mm isotropic resolution collected
on 202 non-demented older adults (65-95 age-range, 50% male) participating in
the Rush Memory
and Aging Project1 were used in this work. The data were processed using TORTOISE2 and were used in the following method to develop a super-resolved DTI template
of the older adult brain.
Template construction approach:
The proposed method for constructing a high spatial
resolution DTI template consisted of the following steps (Fig.1):
Step 1: Raw DTI data of 2mm isotropic
resolution from all participants were spatially normalized in a 0.5mm isotropic
resolution space using DRTAMAS3
Step 2: The resulting non-linear deformations
were utilized to map the signals from the raw space to exact physical locations
in the 0.5mm template space. This process eliminated interpolations incurred in
conventional template building methods.
Step 3: In addition to the spatial signal relocation,
each tensor in template space was reoriented based on the rotation information of
the corresponding deformation field.
Step 4: The final tensor in a 0.5mm isotropic
voxel in template space was calculated as the weighted average of all tensors
included in that voxel. The weights were derived using a Gaussian kernel with a
standard deviation equal to the standard deviation of the diffusion tensor
trace values included in the template space voxel, and centered at the median
trace value included in that voxel. This approach is less sensitive to the
effects of residual misregistration.
Evaluation:
The resulting high-resolution DTI template is part of the 0.5mm version of the MIITRA atlas4 (www.nitrc.org/projects/miitra) and is referred to here as the MIITRA 0.5mm DTI template.
The new template was compared to 5 publicly
available DTI templates: ICBM815, NTU6, IIT v5.07, EVE8
of 1mm isotropic resolution and IXI9
of resolution 1.75mm X 1.75mm X 2.25mm (Fig.2). First, fractional anisotropy (FA) maps of all templates were compared by visual inspection and also in terms of image sharpness demonstrated by the normalized power spectral density in all axes. Next, the accuracy of inter-subject DTI spatial normalization was compared using each template as reference for normalization of DTI data from 90 non-demented ADNI10 participants. Normalization accuracy was assessed by means of the standard deviation of FA and trace, coherence of primary eigenvectors (COH), average Euclidean distance of diffusion tensors (DTED) and total variance of the diffusion tensors (TVDT) in white matter.Results
Fine white matter structures such as the a) anterior
commissure, b) posterior commissure, c) inter-thalamic adhesion and d) optic
chiasm were clearly resolved in the MIITRA 0.5mm DTI template (Fig.3A). In
contrast, these features were either less visible in some of the 1mm templates,
or not present in others (Fig.3A). Image sharpness assessed by means of the
high spatial frequency content in the normalized power spectra was higher in
the FA maps of MIITRA 0.5mm template, IIT v5.0 and EVE compared to other
templates (Fig.3B). The MIITRA 0.5mm template was free of image artifacts.
Artifacts in ICBM81, NTU and EVE have been pointed out in the literature7.
Finally, MIITRA 0.5mm allowed higher inter-subject spatial normalization accuracy
for DTI data from older adults compared to other templates (Figs.4,5). This was
demonstrated by the higher relative number of white matter voxels with low FA and
trace standard deviation (Fig.4A,B,C,D), high COH (Fig.5A,B), and low DTED and TVDT
(Fig.5C,D,E,F) for registration to MIITRA 0.5mm compared to other templates.Discussion
The new MIITRA 0.5mm DTI template is the
first high-resolution population-based template of the older adult brain. This
work demonstrated that the MIITRA 0.5mm template exhibits high image quality,
high sharpness, is free of artifacts, and resolves fine white matter structures.
Furthermore, the MIITRA 0.5mm template provided higher spatial normalization
accuracy of older adult DTI data compared to other available templates. This
was due to the higher image quality and the fact that it was more representative
of the older adult brain than other templates (NTU, IIT v5.0, EVE are all young
adult templates).Conclusion
The findings of this work have important
implications in regard to template selection in DTI studies on older adults. The
MIITRA 0.5mm template is a high-quality, high-resolution diffusion tensor
template of the older adult brain that provides higher DTI spatial
normalization accuracy than other available templates even for normalization of
lower resolution older adult data.Acknowledgements
This study was supported by National Institutes of Health grant R01AG052200, P30AG010161, UH2NS100599, UH3NS100599, R01AG064233, R01AG17917References
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