Thomas Küstner1, Aurelien Bustin1, Olivier Jaubert1, Radhouene Neji1,2, Claudia Prieto1, and René M Botnar1
1Biomedical Engineering Department, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom, 2MR Research Collaborations, Siemens Healthcare Limited, Frimley, United Kingdom
Synopsis
Free-breathing
continuous acquisitions, so called free-running, enable 3D whole-heart coverage
for motion-resolved functional cardiac MRI. In prior work approaches based on
3D radial imaging were proposed with scan times of ~10-15min which also require
computationally demanding reconstructions. In this work, we propose a 3D
Cartesian free-running water-selective sequence that provides isotropic 3D
whole-heart CINE imaging in <2min. Data is acquired with a variable-density
spiral-like 3D Cartesian out-inward sampling and sequence-adaptive tiny-golden
and golden angle increment. Respiratory motion-corrected and cardiac
motion-resolved CINE images are obtained from a multi-bin-PROST reconstruction
which exploits spatial-temporal redundancies. High agreement to conventional 2D
CINE was observed.
Introduction
Cardiac CINE imaging enables the assessment of
morphology and function to diagnose cardiovascular diseases. 3D free-breathing
continuous acquisitions1-5, so called free-running, have been
proposed to reconstruct 3D whole-heart CINE images with respiratory motion
correction or motion-resolved. These approaches retrospectively assign the data
into different cardiac and respiratory phases based on ECG or self-gated
cardiac and respiratory signals. Cardiac and respiratory resolved images are
then reconstructed exploiting temporal redundancy in both cardiac and
respiratory directions6. These approaches have shown
promising image quality in reasonable scan times of ~10-15min (for high spatial
resolution), however require long reconstruction times due to non-Cartesian data
sampling and some rely on administration of contrast agent for sufficient image
contrast.
Here, we propose a 3D Cartesian free-running
acquisition which enables translational beat-to-beat respiratory motion correction
and cardiac motion-resolved images of the whole-heart without contrast
administration in a clinically feasible scan time (<2 minutes) and
reconstruction times (~10 minutes). A free-running CINE sequence with variable-density
CASPR (VD-CASPR) 3D Cartesian sampling7 and embedded self-navigation enables incoherent
and non-redundant sampling within and between respiratory and cardiac phases. A
water-selective balanced steady-state free-precession (bSSFP) sequence is employed
reducing the impact of fat-related motion aliasing. An efficient multi-bin
PROST (MB-PROST)7 reconstruction exploits patch-based spatial-temporal
redundancies to provide high quality images.Methods
Acquisition: VD-CASPR sampling8,9 with alternating tiny-golden and golden
angle increment between spirals continuously undersamples the Cartesian ky/kz plane with an acceleration factor L (Fig.1). An acquisition-dependent
tiny-golden angle is calculated based on the total desired scan time TA and
cardiac phases to ensure incoherent and non-redundant sample-to-bin allocation
for the continuous free-breathing CINE acquisition. An out-inward trajectory is
used to minimize the effect of eddy currents. The center line of k-space is periodically
sampled to enable 1D cardiac and respiratory self-navigation.
Reconstruction: As shown in Fig.2, data is first
retrospectively binned into respiratory phases based on the respiratory self-navigation
signal which is extracted via PCA6. An auxiliary respiratory
motion-resolved image is reconstructed with MB-PROST for estimation of translational
respiratory motion. Respiratory translational motion-corrected data is then
binned into cardiac phases based on the cardiac self-navigation signal and
considering a spatially varying Gaussian soft-weighting amongst neighboring
cardiac phases (see Fig.2 V1
to V3). Subsequently, a cardiac
motion-resolved 3D CINE image is reconstructed using MB-PROST. MB-PROST
alternates between two optimization problems: 1) an L2-norm regularized
reconstruction using the denoised data from step 2 as a prior, and 2) an
efficient low-rank patch-based denoising. MB-PROST exploits redundant
information on a local (within a patch), non-local (similar patches within a
spatial neighborhood) and temporal (amongst all motion phases) scale with an
implicit motion-alignment amongst patches.
The proposed free-running 3D Cartesian CINE was
acquired with a water-selective (1-2-1 binomial pulse) bSSFP sequence in
sagittal orientation in ten healthy subjects with 1.5T MRI (MAGNETOM Aera,
Siemens Healthcare, Erlangen, Germany) and TE=2.33ms, TR=4.66ms, flip angle α=39°, acceleration L=8, 1.9mm3 isotropic
resolution within TA=1:50min:s for whole-heart coverage. Motion-resolved images
are reconstructed to 8 respiratory and 16 cardiac phases (40-50ms temporal resolution).
An additional conventional
multi breath-hold 2D CINE (short axis, non-fat suppressed, TE = 1.06ms, TR = 2.12ms, flip angle
α=52°, 1.9x1.9x8mm resolution, LV coverage, TA=4:20min:s) was acquired for comparison of LV functional
parameters: end-systolic volume (ESV), end-diastolic volume (EDV) and ejection
fraction (EF), which were derived from manually segmented LV endo- and
epicardium.Results and Discussion
Animated
Fig. 3 shows cardiac motion-resolved images for two subjects of the proposed
free-running 3D Cartesian CINE with reformats into short axis, 2-chamber,
4-chamber and coronal views. Good agreement between free-running 3D Cartesian CINE
and conventional 2D CINE can be observed in the short axis view. The isotropic
resolution of the proposed approach enables high-resolution reformats into
arbitrary orientations. Binning with the cardiac self-navigator signal shows good
agreement with an additionally acquired ECG signal. MB-PROST could be used to
simultaneously exploit redundancies in the respiratory and cardiac direction
with the consequent tradeoff in reconstruction time. A respiratory-corrected
approach was chosen to provide a fast reconstruction in around ~10min. Spatial
coverage of the proposed free-running 3D CINE in comparison to conventional 2D
CINE is shown in Fig. 4. Fig. 5 shows Bland-Altman plots for ESV, EDV EF
between the proposed free-running 3D CINE and conventional multi breath-hold 2D
CINE sequence indicating no bias and tight confidence intervals of ESV=±1.6ml, EDV=±8.2ml, EF=±2.1%.Conclusion
The
proposed 3D Cartesian free-running CINE provides respiratory-corrected and cardiac
motion-resolved images with high spatial and temporal resolution acquired under
free-breathing in <2min scan time and ~10min reconstruction time.Acknowledgements
This work
was supported by EPSRC (EPSRC EP/P032311/1, EP/P001009/1 and EP/P007619/1) and Wellcome
EPSRC Centre for Medical Engineering (NS/A000049/1).References
1. Coppo S, Piccini D, Bonanno G,
Chaptinel J, Vincenti G, Feliciano H, Van Heeswijk RB, Schwitter J, Stuber M.
Free‐running 4D whole‐heart self‐navigated golden angle MRI: initial results.
Magnetic resonance in medicine 2015;74(5):1306-1316.
2. Liu J, Nguyen TD,
Zhu Y, Spincemaille P, Prince MR, Weinsaft JW, Saloner D, Wang Y. Self-gated
free-breathing 3D coronary CINE imaging with simultaneous water and fat
visualization. PloS one 2014;9(2):e89315.
3. Pang J, Sharif B,
Fan Z, Bi X, Arsanjani R, Berman DS, Li D. ECG and navigator‐free
four‐dimensional whole‐heart coronary MRA for simultaneous visualization of cardiac
anatomy and function. Magnetic resonance in medicine 2014;72(5):1208-1217.
4. Wu HH, Gurney PT,
Hu BS, Nishimura DG, McConnell MV. Free‐breathing multiphase whole‐heart
coronary MR angiography using image‐based navigators and three‐dimensional
cones imaging. Magnetic resonance in medicine 2013;69(4):1083-1093.
5. Qi H, Jaubert O,
Bustin A, Cruz G, Chen H, Botnar R, Prieto C. Free-running 3D whole heart
myocardial T1 mapping with isotropic spatial resolution. Magnetic Resonance in
Medicine 2019;82(4):1331-1342.
6. Feng L, Coppo S,
Piccini D, Yerly J, Lim RP, Masci PG, Stuber M, Sodickson DK, Otazo R. 5D
whole-heart sparse MRI. Magnetic Resonance in Medicine 2018;79(2):826-838.
7. Küstner T, Bustin
A, Neji R, Botnar R, Prieto C. 3D Cartesian Whole-heart CINE MRI Exploiting
Patch-based Spatial and Temporal Redundancies.
Proceedings of the European Society for Magnetic Resonance in Medicine
(ESMRMB); 2019.
8. Prieto C, Doneva
M, Usman M, Henningsson M, Greil G, Schaeffter T, Botnar RM. Highly efficient
respiratory motion compensated free-breathing coronary MRA using golden-step
Cartesian acquisition. Journal of magnetic resonance imaging : JMRI
2015;41(3):738-746.
9. Bustin A, Ginami
G, Cruz G, Correia T, Ismail TF, Rashid I, Neji R, Botnar RM, Prieto C. Five-minute
whole-heart coronary MRA with sub-millimeter isotropic resolution, 100%
respiratory scan efficiency, and 3D-PROST reconstruction. Magnetic Resonance in
Medicine 2018;81(1):102-115.