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Magnetic Resonance Fingerprinting with Quadratic RF Phase for Continuous Temperature Monitoring in Aqueous Tissues
Rasim Boyacioglu1, Megan Poorman2,3, Kathryn Keenan2, and Mark Griswold1
1Radiology, Case Western Reserve University, Cleveland, OH, United States, 2Physical Measurement Laboratory, National Institute of Standards and Technology, Boulder, CO, United States, 3Department of Physics, University of Colorado Boulder, Boulder, CO, United States

Synopsis

Conventional temperature monitoring is based on measurement of off-resonance via gradient-echo phase scans for non-adipose tissue. MRF with quadratic RF phase (MRFqRF) simultaneously quantifies off-resonance, T1, T2, and T2*. For a proof of principle thermometry experiment with MRFqRF, an ex-vivo aqueous sample was heated with laser ablation, temperature was tracked, and multiple continuous MRFqRF scans were obtained with different temporal resolutions. Scanner frequency drifts were removed automatically with Independent Component Analysis. Residual changes in off-resonance predict the temperature change. However, MRFqRF temporal resolution (~10s) needs to be increased further for clinical relevance.

Introduction

Magnetic Resonance Fingerprinting1 (MRF) is a quantitative imaging technique for simultaneous mapping of multiple tissue properties and system parameters. Recently, MRF was extended to map T2* and off-resonance (Δf) alongside T1 and T22. MRF with quadratic RF pulses (MRFqRF) sweeps the on-resonance frequency linearly between -1/(2*TR) to 1/(2*TR) in time by modulating the RF phase with a quadratic function (Figure 1). Dynamic sweeping of off-resonance frequencies makes the signal evolutions different for all the time points and stable against random noise (Figure 2). In this work, stability of MRFqRF for off-resonance mapping was explored for use in temperature monitoring of aqueous tissues. However, the conventional temporal resolution of MRFqRF is much slower than what is required for temperature monitoring of thermal therapies (40s vs 3s). Here, we performed proof of concept experiments with the MRFqRF framework to optimize it for fast and continuous mapping of Δf for temperature quantification.

Methods

Experimental setup
A tofu phantom was immersed in a water bath and placed at isocenter of a 3T MRI scanner (Skyra, Siemens). The laser ablation device’s applicator (LaserPro 980, PhotoMedex) and a fiber optic temperature probe (Luxtron, LumaSense Technologies) were placed together in the center of the phantom. A second temperature probe was positioned inside the phantom away from the site of the heating for reference measurements. For each experiment, the tofu was heated with the laser ablator for ~20 s at 1.5 W of Continuous Wave power, followed by subsequent cooling (total of 6:40 minutes per experiment).
Data acquisition
To approach the temporal resolution of conventional proton resonant frequency-shift thermometry (~3s), the number of time points per one MRFqRF scan was reduced. This was achieved by sweeping the off-resonance frequency faster with respect to MRFqRF with 3516 time points (0.72 Hz/TR) by adjusting the quadratic RF function (2x in 1752 time points with 1.44 Hz/TR and 4x in 876 time points with 2.88 Hz/TR). The original flip angle pattern was resampled, and the same four block structure was preserved for consistency. The phantom setup described above was scanned for the 6:40 minutes with three different 2D MRFqRF versions during heating and cooling of the phantom.
Reconstruction and post-processing
2D MRFqRF data were reconstructed after compression with randomized SVD3. The compressed data were matched to a compressed dictionary, which was also partially undersampled in the tissue dimension. The low resolution in the tissue dimension was recovered with quadratic interpolation4 after the matching. The relatively strong gradients needed for MRFqRF acquisition can cause eddy currents and frequency drifts over time (~4 Hz/min), which need to be removed to see underlying off-resonance changes due to temperature. For automated estimation of frequency drift, Independent Component Analysis (ICA)5 was run on the dynamic Δf series of an 11x11 ROI from a region where no temperature change is expected. The component that describes the linear frequency drift was then removed from all voxels in the dynamic Δf series. Finally, the reconstructed off-resonance maps were converted to ΔT with the following equation6, where $$$γ$$$ is the gyromagnetic ratio in MHz/T, B0 is the field strength in Tesla, and n is the dynamic scan number. $$ \triangle T_n=\frac{\triangle f_n - \triangle f_0}{-0.01*\gamma*B_0} $$

Results

Figure 3 compares the signal evolutions of two different dictionary entries with matching T1 and T2 for MRFqRF 3516/1752/876. Inner product of signal evolutions is similar across number of time points, but SNR is reduced as the number of time points decrease. The ΔT of the laser ablation experiment computed from MRFqRF Δf maps using 3516/1752/876 time points is plotted in Figure 4. All three acquisitions were able to detect heating. Reducing the number of time points brings finer resolution sampling of the heating curve through time, but also increased noise, which can be inferred from the standard deviation over voxels around the not heated point.

Discussion

While heating occurred relatively quickly (~1 °C/s), cooling was much slower, allowing even the slowest MRFqRF version (40s per scan) to capture the general trend of temperature. Relatively stable MRFqRF 876 can sample the heating curve 4x faster, but it is also significantly slower than clinical need. The SNR with faster MRFqRF translates into slightly noisier ΔT estimations, but the relatively stable inner product is still the dominant factor. This observation might be useful for future optimization. Frequency drift correction is extremely important to be able to focus on small off-resonance fluctuations triggered by changes in temperature. Simple summation of voxel time series or fitting a linear function might be suboptimal considering the large fluctuations that are possible (Figure 5, left). ICA is able to detect the frequency drift component consistently (Figure 5, right).

Conclusions

This work demonstrates the first steps for temperature monitoring with an MRF framework. However, clinically-feasible ablations would benefit from further increases in temporal resolution with faster sampling of the heating curve. Additionally, no information can be obtained about heating in adipose tissue with this current implementation due to the use of off-resonance changes for temperature computation. Improvements to acquisition speed and contrast in multiple tissue types is necessary, before it can be used in real-time treatment monitoring and is the subject of future work7.

Acknowledgements

The work was supported by Siemens Healthcare and a cooperative grant between the University of Colorado and NIST. Authors would like to thank Will Grissom for use of the temperature probes.

References

1. Ma D, Gulani V, Seiberlich N, et al. Magnetic resonance fingerprinting. Nature 2013;495: 187–192.

2. Wang C, Coppo S, Mehta B, et al. Magnetic resonance fingerprinting with quadratic RF phase for measurement of T2* simultaneously with δf ,T1, and T2. Magn Reson Med 2019 81(3):1849-1862.

3. Yang M, Ma D, Jiang Y, et al. Low rank approximation methods for MR fingerprinting with large scale dictionaries. Magn Reson Med 2018 79(4):2392-2400.

4. McGivney D, Boyacioglu R, Jiang Y, et al. Towards Continuous Tissue Property Resolution in MR Fingerprinting using a Quadratic Inner Product Model. ISMRM proceedings 2019, p4526.

5. FastICA toolbox (http://research.ics.aalto.fi/ica/fastica/)

6. Rieke V and Butts Pauly K. MR Thermometry. Journal of Magnetic Resonance Imaging 2008; 27(2):376-390

7. A feasibility study of Magnetic Resonance Fingerprinting for multi-contrast temperature mapping in both aqueous and adipose tissues. Submitted to ISMRM 2020.

Figures

Figure 1. a) Flip angle and b) TR for the MRFqRF sequence with 3516 time points. c) On-resonance frequency is swept through time. d) Spins with the same T1 and T2 but with different on-resonance frequencies are encoded through time making MRFqRF stable against Gaussian noise. The other acquisition parameters: 300x300 mm2 FOV, 1.2 mm x 1.2 mm in-plane resolution, 5 mm slice thickness, TE = 2.2 ms.

Figure 2. The same 2D MRFqRF brain data was reconstructed 50 times after adding noise. The noise was measured internally within the MRFqRF scan. a) mean off-resonance map over 50 reconstructions, b) standard deviation over 50 reconstructions show the stability of mapping off-resonance with MRFqRF. Considering the step size for off-resonance is 2 Hz in the dictionary, the precision is on the order of ~1% for the whole slice.

Figure 3. Two dictionary entries, with different Δf (-10 Hz, 10 Hz) and the same T1=1220 ms and T2=65 ms, for the three versions of MRFqRF are plotted. The inner products (IP) are similar between the MRFqRF versions (~0.61) and are much smaller than typically seen for MRF dictionaries (>0.9). Smaller mean magnetizations with fewer time points bring lower SNR (%67.7 and %48 with respect to MRFqRF 3516 for MRFqRF 1752 and 876, respectively). In total, there are 10/20/40 continuous dynamic scans in 6:40 minutes for MRFqRF with 3516/1752/876 time points, respectively (40/20/10 s per dynamic)

Figure 4. Δ°C of an 7x7 ROI with MRFqRF 3516/1752/876 scans for the heated point (left) and the reference point with no heating (right). Individual voxel dynamic Δ°C and their mean are plotted in color and black, respectively. Temperature probe data is plotted in red. Standard deviation is higher as number of time points per scan decrease both with and without heating. Mean (over dynamic temperature points) standard deviation (over voxels) without heating was calculated to be 0.118, 0.1919 and 0.2886 for MRFqRF with 3516, 1752 and 876 time points, respectively.

Figure 5. Voxel dynamic Δf series from a reference point ROI without any temperature or laser probes that go into ICA from MRFqRF 3516/1752/876 scans (left) and the resulting ICA-based drift components (right). The general trend of frequency drift can be followed even from individual voxel time series (~4-5 Hz/min). However, there are either small continuous or random large fluctuations that are different between voxels, which might cause problems for drift estimation based on averaging. ICA automatically delineates the common drift component successfully.

Proc. Intl. Soc. Mag. Reson. Med. 28 (2020)
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