Xiaochuan Wu1,2, Zheyuan Yi1,2,3, Yilong Liu1,2, Fei Chen3, Yanqiu Feng4, and Ed X. Wu1,2
1Laboratory of Biomedical Imaging and Signal Processing, The University of Hong Kong, Hong Kong, China, 2Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, China, 3Department of Electrical and Electronic Engineering, Southern University of Science and Technology, Shenzhen, China, 4School of Biomedical Engineering, Southern Medical University, Guangzhou, China
Synopsis
T2* mapping in
abdominal imaging is challenging due to respiration motions that can result in
severe artifacts and affect the accuracy of T2* quantification. Traditional simultaneous
autocalibrating and k-space estimation (SAKE) provides a calibrationless
parallel imaging approach to reduce the image acquisition time. However, SAKE does not utilize the highly sharable
image contents and coil sensitivities among multi-slice multi-echo data. In
this study, we proposed a joint calibrationless reconstruction of multi-slice
multi-echo images from undersampled MR data for abdominal imaging. Results demonstrated
that the resulting T2* maps were in excellent agreement with those from the
fully sampled data.
Introduction
T2* mapping is a valuable
technique in clinical diagnosis including liver iron and fat measurements. The
most common method to map T2* is to acquire breath-hold multi-echo gradient-echo
images. However, T2* mapping is challenging in the abdominal imaging since it
is susceptible to respiratory and other physiological motions. Parallel imaging
(PI) is a widely used technique for accelerated image acquisition by reducing
phase-encoding steps through multiple
receiving coils. However, PI reconstruction generally requires the coil
sensitivity information from extra calibration scan1 or
autocalibration signals2, thus reconstructed image quality is highly
dependent on the accuracy of calibration data. For abdominal imaging, getting
stable and accurate calibration data is difficult. Simultaneous autocalibrating
and k-space estimation (SAKE)3 provides a solution to
calibrationless PI. However, SAKE is based on single-contrast reconstruction. It is vulnerable to uniform
undersampling, thus not highly robust in practice. More importantly, SAKE does not utilize the sharable image contents and coil
sensitivities that are abundantly available among multi-slice multi-echo data.
In this study, we proposed a multi-slice acquisition scheme where phase
encoding direction orthogonally alternates among adjacent slices. We further
presented a reconstruction method to jointly reconstruct undersampled multi-slice
multi-echo k-space datasets through a block-wise Hankel tensor completion
framework (ME-HTC). The proposed method produced excellent reconstruction
results with high acceleration and without calibration data, yielding abdominal
T2* maps that were comparable to
those from the fully sampled data. Method
Data acquisition
Fully sampled
16-channel 16-echo multi-slice abdominal datasets were acquired on a 3T Philips
scanner with single breath-hold. The gradient echo was applied with TR = 18 ms,
TEs = 1.376 to 17.027 ms with 1.043 ms increments, matrix size = 175×175, FOV = 350×350 mm2,
flip angle = 25°, slice sickness/gap = 5/0 mm. The 1D undersampling masks were
generated for retrospective undersampling along phase encoding direction in a
uniform manner with acceleration factor R = 2, 3 and 4.
Image reconstruction
The proposed ME-HTC
is formulated as a low-rank tensor completion problem as illustrated in Fig. 1. ME-HTC jointly reconstructs the
multi-slice multi-echo in a calibration-free manner. In brief, it first
acquires the undersampled k-space without calibration data by alternating phase
encoding directions in adjacent slices. Then the multi-slice multi-echo k-space
dataset are constructed into a block-wise Hankel matrix along kernel dimension
and coil dimension respectively4. The sharable image contents and coil sensitivities among
multi-slice multi-echo data are utilized in subsequently iterative
low-rank tensor approximation and data consistency, to jointly reconstruct the
multi-slice multi-echo abdominal images. For comparison, traditional SAKE
method is also used to reconstruct individual multi-slice multi-echo images. Results
As shown in Fig. 2, traditional SAKE method could
not cope with the uniform undersampling pattern without k-space central lines
and exhibited severe aliasing artifacts. In contrast, the proposed ME-HTC could
reconstruct two adjacent images jointly with virtually little artifacts. Fig. 3 shows that, with the increase of R, the ME-HTC multi-slice multi-echo images
only suffered from slight artifacts. Fig.
4 demonstrates that the abdominal T2* values obtained from undersampled
data using ME-HTC were in excellent agreement with those computed from images
reconstructed by fully sampled data. Discussion and conclusions
This study
demonstrated the multi-slice T2* mapping from multi-slice multi-echo images
reconstructed using the proposed acquisition and ME-HTC joint reconstruction
scheme without coil calibration. Here the acquisition involves alternating
phase encoding directions between adjacent slices. The subsequent
reconstruction scheme fully utilizes the abundant sharable information (coil
sensitivities and image contents/supports) within the multi-slice multi-echo
data. As a result, high-quality images can be reconstructed from the uniformly
undersampled k-space data without coil sensitivity calibration, yielding
superior performance while the traditional individual SAKE reconstruction completely
failed. This new parallel imaging acquisition and reconstruction method leads to
excellent T2* mapping results. In
summary, our proposed acquisition and reconstruction method presents a new and
calibrationless approach to accelerated abdominal T2* mapping. Acknowledgements
This study is
supported in part by Hong Kong Research Grant Council (C7048-16G and
HKU17115116 to E.X.W.), Guangdong Key Technologies for Treatment of Brain
Disorders (2018B030332001) and Guangdong Key Technologies for Alzheimer's
Disease Diagnosis and Treatment (2018B030336001) to E.X.W.References
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