Tess E. Wallace1,2, Davide Piccini3,4,5, Tobias Kober3,4,5, Simon K. Warfield1,2, and Onur Afacan1,2
1Computational Radiology Laboratory, Boston Children's Hospital, Boston, MA, United States, 2Department of Radiology, Harvard Medical School, Boston, MA, United States, 3Advanced Clinical Imaging Technology, Siemens Healthcare, Lausanne, Switzerland, 4Radiology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland, 5LTS5, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
Synopsis
We propose a novel
motion compensation strategy for 3D radial MRI that directly estimates rigid-body
motion parameters from the central k-space signal, which acts as a self-encoded
FID navigator. By modelling trajectory deviations as low-spatial-order field
variations, motion parameters can be recovered using a model that predicts the
impact of motion and field changes on the FID signal. The proposed method enabled
robust compensation for deliberate head motion in volunteers, with position
estimates and image quality equivalent to that obtained with electromagnetic
tracking. Our approach is suitable for robust neuroanatomical imaging in
subjects that exhibit patterns of large, frequent motion.
Introduction
Radial acquisitions are inherently motion robust and repeated
acquisition of the center of k-space provides an opportunity for estimation of
motion from the data itself. Most self-navigation methods are based on detection
of motion from the central k-space signal (self-encoded FID navigator), followed
by co-registration of low-resolution images reconstructed from segments of
radial spokes, to correct for periodic1 or bulk motion2. However, this requires a
sufficient amount of data to be acquired in the same position to enable
reconstruction of high-quality navigator images and there is a trade-off between
tracking accuracy and frequency of motion updates, particularly for 3D imaging.
Another problem is that gradient moment imbalances and magnetic field
inhomogeneities lead to trajectory deviations that disrupt the self-navigator
signal, as projections become off-centered3. In this work, we propose a
novel motion compensation strategy that directly estimates motion parameters from
self-encoded FID navigator signals in a 3D radial (kooshball) acquisition using
a forward model that predicts the effects of both motion and magnetic field
deviations on the self-navigator signal. Methods
The self-encoded FID navigator signal from coil $$$j$$$ and spoke $$$n$$$ may be expressed as:
$$y_{j,n}(TE)=\int s_{j,n}(\mathbf{r})\cdotp{\rho}(\mathbf{r},TE)\cdotp{\exp}(i\gamma{TE}\delta B_{0,n}(\mathbf{r})) d\mathbf{r}$$
where $$$s_{j,n}(\bf{r})$$$ is the complex coil sensitivity profile at
position $$$\bf{r}$$$ for
object pose $$$n$$$; $$$\rho(\bf{r}, TE)$$$ is the effective proton density; and $$$\delta B_{0,n}(\bf{r})$$$ includes the effects of motion-induced
magnetic field inhomogeneities, as well as gradient moment imbalances due to
eddy current effects and residual gradient delays in each
spoke. In the head frame of reference, these can modelled by low-spatial-order
spherical harmonic (SH) expansion4.
Low-resolution (4 mm)3 Cartesian reference images
with matched scan parameters were acquired on surface and body coils for
estimation of $$$s_j$$$ and $$$\rho$$$.
Motion of the coils relative to the object (6 DOF) and changes in SH coefficients
up to second order were simulated to calibrate the FID motion model5. A gradient echo sequence was modified to acquire
radial data with a pseudo-random 3D golden angle sampling pattern6. Three volunteers were
scanned at 3T (MAGNETOM Skyra, Siemens Healthcare, Erlangen, Germany) with a 64-channel
head coil, after providing written informed consent. Three scans were acquired
for each volunteer using the above prototype radial sequence with 1) no motion;
2) abrupt head movements; and 3) continuous head shaking motion, with the
following scan parameters: TE/TR = 4.57/10 ms, FA = 30°, FOV = 240 mm, 1-mm isotropic resolution, RBW = 400 Hz/pix, 48k spokes, total acquisition time 8 minutes. Isotropic
gradient delay compensation was prospectively applied by adapting the readout
dephasing gradient amplitude3. The central k-space signal
was extracted from each spoke and phase-constrained least-squares fitting7 was used to estimate motion
parameters from the complex FID signal every TR.
Rotations and translations were compensated retrospectively
by phase-correcting and rotating each k-space line. Images were reconstructed in
Matlab by applying an iteratively calculated weighting function8 and regridding the data using
the NUFFT toolbox9. Quantitative image quality
metrics (normalized root-mean-square error and structural similarity index) were
computed relative to the corresponding no motion image. External electromagnetic (EM) tracking motion measurements (Robin Medical, Baltimore, MD) were also recorded for each and used to retrospectively
correct the radial data for comparison.Results
Figure 1 shows an example of motion measurements from
self-encoded FID navigators (green) and external tracking (red) for abrupt head
motion. The results of predicting motion without considering the effects of
gradient field deviations on the self-encoded FID signals are also shown
(blue). Results for continuous head shaking are shown in Figure 2. Across all
volunteers and paradigms, self-encoded FID navigators had mean absolute errors
of 0.68 ± 0.74 mm and 0.92 ± 0.80° relative to external tracking for maximum
motion amplitudes of ~12 mm and 10°. Retrospective correction of the 3D radial
data resulted in substantially improved image quality for both abrupt (Fig. 3)
and continuous shaking motion (Fig. 4). NRMSE decreased from 4.13% ± 1.17% to
2.63 ± 0.97% following correction, while SSIM increased from 0.87 ± 0.06 to 0.92
± 0.05 across all volunteers (Fig. 5). Discussion
The proposed
method enables quantitative tracking information to be rapidly obtained from
self-encoded FID navigators in 3D radial MRI. Extending the FID navigator
motion model to account for low-spatial-order field variations, which captures the
effects of magnetic field inhomogeneities, residual gradient delays and eddy
current effects, enables motion estimates with higher accuracy and precision
compared to fitting for motion parameters alone. Mean absolute errors were
within 10% of the maximum observed motion amplitude. Retrospective correction
results are comparable to those achieved using external tracking, but without
the need for any additional hardware. A key advantage of the proposed method is
that it does not involve reconstruction and co-registration of navigator
images, as such an approach assumes motion occurs intermittently with sufficiently
long periods of motion-free time to construct navigator images. Instead, our
approach obtains rigid-body motion estimates from every radial line,
enabling much enhanced temporal resolution of motion measurement. Conclusion
Quantitative motion parameters
can be continuously measured from self-encoded FID navigator signals in each
radial spoke using the proposed method, which has potential to compensate for fast, uncontrolled motion in
children and other uncooperative subjects. Acknowledgements
This research was supported in part by NIH grants R01 EB019483, R01 NS079788, R01
DK100404, R44 MH086984, IDDRC U54 HD090255, a pilot grant (PP-1905-34002) from National Multiple Sclerosis Society, and by an Early Career Award from the
Thrasher Research Fund.References
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