Santhosh Iyyakkunnel1,2, Jessica Schäper1,2, and Oliver Bieri1,2
1Department of Radiology, University Hospital Basel, Basel, Switzerland, 2Department of Biomedical Engineering, University of Basel, Basel, Switzerland
Synopsis
Only
recently, phase imaging with balanced steady-state free precession (bSSFP) has
been suggested for electrical properties tomography (EPT). Here we suggest exploring
the SSFP configuration space retrieved from multiple phase-cycled bSSFP scans used
for relaxometry also for electrical conductivity mapping. Consequently, the
conductivity can be estimated in conjunction with standard quantitative tissue
properties requiring no additional scan time.
Introduction
Balanced
Steady State Free Precession (bSSFP) has recently attracted increased interest
for electric properties tomography (EPT) of the brain and the lung1,2. To this
end, the phase of bSSFP is used,
yielding an estimate of the transceive phase under ideal conditions that is at
on-resonance and in the limit of TR << T2. On the one hand, a
method to address this issue was proposed by Ozdemir et al.2 by the
acquisition of two phase-cycled bSSFP scans, a B0 map and a T2 map. On
the other hand, it was shown that relaxometry can be performed using the SSFP modes
retrieved from multiple phase-cycled bSSFP scans3. In this work, we thus explore the potential to perform EPT in
conjunction with tissue relaxometry from a set of multiple phase-cycled bSSFP
scans.Methods
Sampling the
frequency response profile of bSSFP from multiple scans with different RF phase
increments provides an elegant way to access the SSFP configuration modes, as
described in a seminal work by Zur4. In principle, the signal $$$S$$$ contains the information about the configurational states $$$M^{(n)}$$$ and the RF transmit phase $$$\varphi^+$$$:
$$
S(x\cdot TR) \propto E_2^x e^{i\varphi} e^{ix\vartheta} \sum_{n=-\infty}^{\infty} e^{in\vartheta}M^{(n)} \approx E_2^x e^{2i\varphi^+} e^{ix\vartheta} \sum_{n=-\infty}^{\infty} e^{in\vartheta}M^{(n)}\quad , \tag{1} $$
where we
used the transceive phase assumption, $$$ 2\varphi^+\approx\varphi $$$ (with $$$\varphi$$$ being the transceive
phase), and $$$\vartheta$$$ denotes the
phase which is accumulated during one repetition time (TR) interval as a
consequence of the static field inhomogeneity (as usual, $$$ E_{2}^{x} \triangleq e^{-x\cdot TR/T_2} $$$, and diffusion
and finite RF pulse effects are neglected).
It is now
directly evident (cf. Eq. (1)), that the transmit phase can be
retrieved, e.g. from a measurement of the two lowest order configuration modes
($$$F_{-1},\;F_{0}$$$) for a centered echo (i.e., $$$x$$$ = 1/2):
$$ \varphi^+=\frac{arg[\frac{1}{2}(F_{-1}\cdot F_{0})]}{2} \quad , \tag{2} $$
where
$$ F_{-1}\sim e^{2i\varphi^+}e^{-i\vartheta/2}M^{(-1)},\quad F_{0}\sim e^{2i\varphi^+}e^{i\vartheta/2}M^{(0)} \quad . \tag{3}$$
In this
work, eight phase-cycled 3D bSSFP scans were acquired with RF phase increments of 0°,
45°, 90°, 135°, 180°, 225°,
270°, 315°. Other
sequence parameters were: TR/TE = 5.0 ms / 2.5 ms, 1.3 mm
isotropic voxel size, 295 Hz/px bandwidth and 192x192x128 matrix size for the phantom, 305 Hz/px and 192x168x128 for in-vivo, non-selective excitation with 30° flip angle. A single bSSFP
scan took 123 s for the phantom, 107 s for the in-vivo brain scan.
Experiments
were carried out on a 3T clinical MR system using a 20 channel head coil for
reception. Two saline phantoms were prepared with 2 g/L and 8.8 g/L sodium
chloride yielding an estimated electrical
conductivity of 0.34 S/m and 1.39 S/m respectively5. MnCl was added (0.125 mM) to reduce the relaxation times to tissue comparable values (T1$$$\sim$$$870 ms,T2$$$\sim$$$ 70 ms).
The
conductivity was reconstructed from the estimated transmit phase by following
relation:
$$ \sigma\approx\frac{1}{\mu_{0}\omega}\triangledown^2\varphi^+ \quad . \tag{4}$$
A weighted
numerical differentiation was performed to adjust for tissue boundaries6.
For the phantom, the phase as well as the conductivity were smoothed by
applying a gaussian shaped low pass filter. Due to additional complexity of in
vivo data, the phase was filtered using a median filter with an isotropic kernel
size of 7 and subsequent edge-preserving
Gaussian bilateral filtering. The
obtained conductivity was subject to gaussian filtering.Results
Exemplary images from the eight phase-cycled bSSFP scans are
shown in Fig. 1 (phantoms) and in Fig. 2 (in vivo), respectively. Using Zur’s
approach to retrieve
the lowest configurational modes $$$F_{-1}$$$
and $$$F_{0}$$$, and
thus the transmit phase using Eq. (2), the conductivity can be estimated (Fig.
3). For the phantoms, an average conductivity of
1.46±0.18 S/m for the left and 0.40±0.08 S/m for the right phantom was obtained; in very good agreement with the theoretical expectations. For the
in-vivo brain scans, the retrieved phase of the two lowest
configurational states, together with the reconstructed
transmit
phase are shown for two different axial slice positions in Fig. 4. Generally, accessing the modes allows to retrieve the tissue
relaxivities (T1, T2), as
well as the conductivity, as demonstrated for
the same slice positions in Fig. 5. Typical
conductivity values for white matter, gray matter and cerebrospinal fluid are about
0.32 S/m, 0.65 S/m and 1.84 S/m respectively.Discussion and Conclusion
The intrinsic properties of bSSFP, that
is rapid imaging with high signal-to-noise, makes this method highly
interesting for EPT, but confounding factors, such as field inhomogeneities and
transverse relaxation, needs to be accounted for. In
this work, we have shown that the
transmit phase and thus the
conductivity can be successfully estimated from a set of phase-cycled bSSFP scans, recently suggested for tissue relaxometry3. The validity of the proposed methodology was confirmed in phantoms and the feasibility was demonstrated for conductivity mapping of the brain in vivo.
In
conclusion, we have suggested to exploit the SSFP configuration space,
retrieved from multiple phase-cycled bSSFP scans, not only for relaxometry but
in conjunction with electrical conductivity mapping. Requiring no additional scan time, this approach has the potential for clinical translation and application of EPT.Acknowledgements
This work
was supported by the Swiss National Science Foundation (SNF grant No.
325230_182008).References
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