Saurav Zaman Khan Sajib1, Munish Chauhan1, and Rosalind J Sadleir1
1School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ, United States
Synopsis
Magnetic
flux densities induced by tES currents can be measured from MR phase and used
to reconstruct current density, electric field and conductivity tensor
distributions, via diffusion tensor magnetic resonance electrical impedance
tomography (DT-MREIT). Determination of tES electric field distributions from DT-MREIT
conductivities is challenging, because DT-MREIT requires data from two independent
current administrations, increasing acquisition time. We demonstrate a deep-learning
model for DT-MREIT reconstruction, showing that conductivity tensors and
electric fields can be measured in human subjects in-vivo using a single current administration. This strategy can be
used to directly monitor tES electric fields and verify treatment precision.
INTRODUCTION:
Transcranial
electrical stimulation (tES) is a non-invasive neuromodulation technique indicated
to treat depression and chronic pain1. In tES, low amplitude current
is delivered to the brain through surface electrodes2. The best contemporary
estimates of electric fields delivered by tES are estimated from computational models
of the head3. However, these models rely on literature values for
tissue conductivities and do not include electrode contact impedances.
Therefore, this approach cannot correctly predict subject-specific fields. DT-MREIT4
has recently been introduced to produce electrical conductivity tensor images
by imaging of a scale factor ($$$\eta$$$) relating
MRI diffusion and conductivity tensors. Stable reconstruction of $$$\mathbf{C}$$$ via
DT-MREIT requires two independent current administrations. Here, we use data
from an in-vivo human experiment to demonstrate
that it is possible to reconstruct $$$\mathbf{C}$$$ using a single experimental
current administration.METHODS:
Experiment: Experimental protocols were approved by the
Arizona State University Institutional Review Board. Data obtained from a
58-year old volunteer male human subject was used to demonstrate method
performance. Data were measured using a 32-channel RF head coil in a 3.0T
Phillips scanner (Phillips, Ingenia, Netherlands) located at the Barrow
Neurological Institute (Phoenix, Arizona, USA). A transcranial electrical
stimulator (DC-STIMULATOR MR, neuroConn, Ilmenau, Germany) was used to deliver
1.5 mA currents using an Fpz-Oz electrode montage. Sets of $$$B_z^m$$$ data
were measured on three axial slices using a multi-echo gradient-echo pulse
sequence and an image matrix size of 128$$$\times$$$128. Other
imaging parameters were, TR/TE/ES=50/7/3 ms, FOV= 224$$$\times$$$ mm2, slice
thickness, 5 mm, and number of echoes, NE = 10. Individual echo images were
then combined to improve the SNR of the acquired $$$B_z^m$$$ signal5. Prior
to echo combination, stray magnetic field corrections were applied to each echo
image6. Figure
1 (b) and (d) show acquired MR magnitude and echo-combined $$$B_z^{opt}$$$ images
respectively for the center slice. Diffusion-weighted images of the three MREIT
slices were also obtained, using an SS-SE-EPI imaging sequence, with $$$b$$$ of 1000 sec/mm2 and fifteen diffusion directions.
The FA map is shown in Fig. 1(e). High-resolution T1-weighted images were also collected to
construct computational models of the head and lead wires (Fig 1a).
Scale-factor reconstruction: We
applied the KVL in a rectangular region $$$\Omega_{ij}$$$, $$$\Omega_{ij}^{'} \in \Omega_t$$$ where, $$$\Omega_t$$$ is
the DT-MREIT slice at $$$z=t$$$ (Fig. 2b). A
dual-loop relationship relating the water diffusion tensor $$$\mathbf{D}$$$, estimated
regional current density7 $$$\mathbf{J}^{P}$$$ from
experimentally obtained $$$B_z^{opt}$$$ data
and the target $$$\hat{\eta}$$$ was
formulated as
$$\begin{cases}\frac{\left(\mathbf{D}^{-1}\mathbf{J}^P\right)_x\left(p_{ij,1}\right)}{\hat{\eta}(x_i,y_{j-1})}+\frac{\left(\mathbf{D}^{-1}\mathbf{J}^P\right)_y\left(p_{ij,2}\right)}{\hat{\eta}(x_i,y_j)}-\frac{\left(\mathbf{D}^{-1}\mathbf{J}^P\right)_x\left(p_{ij,3}\right)}{\hat{\eta}(x_i,y_j)}-\frac{\left(\mathbf{D}^{-1}\mathbf{J}^P\right)_y\left(p_{ij,4}\right)}{\hat{\eta}(x_{i-1},y_j)}=0&\mbox{in}~\Omega_{ij}\\\frac{\left(\mathbf{D}^{-1}\mathbf{J}^P\right)_x\left(p^{'}_{ij,1}\right)}{\hat{\eta}(x_i,y_j)}+\frac{\left(\mathbf{D}^{-1}\mathbf{J}^P\right)_y\left(p^{'}_{ij,2}\right)}{\hat{\eta}(x_{i+1},y_j)}-\frac{\left(\mathbf{D}^{-1}\mathbf{J}^P\right)_x\left(p^{'}_{ij,3}\right)}{\hat{\eta}(x_i,y_{j+1})}-\frac{\left(\mathbf{D}^{-1}\mathbf{J}^P\right)_y\left(p^{'}_{ij,4}\right)}{\hat{\eta}(x_i,y_j)}=0&\mbox{in}~\Omega^{'}_{ij}\end{cases} (1) $$
Scale
factor values at the boundary were assumed, and an overdetermined system was
built comprising $$$2\left(N-2\right)^2$$$ equations,
which was then solved for $$$\left(N-2\right)^2$$$ internal
nodes.
Dual-loop $$$\hat{\eta}$$$ reconstructions
were affected by streaking artefacts due to noise propagation along
equipotential lines (Fig. 3b left). To overcome this, a regressor model of
non-linear artefact functions was built using a deep neural network8,9
(Fig. 2a). Training datasets were obtained from numerical simulations only. Scale
factor values were assumed piecewise constant in each tissue (GM, WM, CSF), and
the DT-MREIT forward problem4 was
been solved for 1000 numerical models (WM: 0.2-0.775, GM: 0.2-0.775, CSF:
0.4-0.8 S•sec/mm3 with 0.1 S•sec/mm3 linear step) using
an FPz-Oz electrode montage. Noise of 0.21 nT was added to each simulated $$$B_z^{*}$$$ image10.
Artefact-affected $$$\eta^{*}$$$ images were then reconstructed using (1). Data from a complementary electrode montage
(T7-T8) was simulated and used to reconstruct artifact-free images of $$$\tilde{\eta}^{*}$$$ using the two-current injection DT-MREIT method4
(Fig. 2c). These two training datasets were used to train a U-net architecture (Fig.
2a) implemented in Keras library in Python. By minimizing $$$l^2$$$ loss function, 1,327,744 parameters were trained using the RMSProp
optimizer with 32-mini-batch size and 1000 epochs.
Electric field reconstruction: The conductivity tensor $$$\mathbf{C} = \eta \mathbf{D}$$$ was
calculated using scale-factors from the trained network (Fig. 2a). Electric field distributions were then
estimated using $$$\mathbf{E} = \mathbf{C}^{-1} \mathbf{J}^P$$$.
Verification: Reconstruction
performance was verified using relative $$$L^2$$$-differences from standard scale-factor images obtained
using the DT-MREIT algorithm3 and another set of $$$B_z^m$$$ data measured using a T7-T8 electrode pair. RESULTS:
Figure
3(a) shows estimated projected current density caused by current flow through
the Fpz-Oz electrode montage. Reconstructed scale factor images from (1) are in
Fig. 3(b-left). As
expected, the reconstructed scale factor image from one current injection was
corrupted by streaking artefacts. Results obtained after correction using the
deep neural network (Fig. 2a) are in Fig. 3(b-right). The neural-network
corrected scale factor image was multiplied with measured diffusion tensor data
to form conductivity tensors4 (Fig. 3(c)) shows the reconstructed
tensor within the ROI (Fig. 1b). Reconstructed electric fields are shown in
Fig. 3d and compared with those from the two-current administration method4
(Fig. 3e-i). Relative $$$L^2$$$-differences
between single-current injection and standard-reconstructed $$$\eta$$$ and derived electric fields were found to be
0.15 and 0.20 respectively. DISCUSSION:
We have
demonstrated that it is possible to reconstruct the conductivity tensor with
reasonable accuracy using single current data. One of the drawbacks of this
implementation is the limited number of training datasets. We plan to use this
method to reconstruct the electromagnetic field for F3-F4 electrode montages
using larger numbers of training datasets.CONCLUSIONS:
Results of in-vivo human experiments demonstrate that stable conductivity
tensors can be reconstructed using only one current injection.Acknowledgements
This
work was supported by award RF1MH114290 to RJS.References
1. Fregni F, Boggio P S and Lima M C. et al. A
sham-controlled, phase II trial of transcranial direct current stimulation for
the treatment of central pain in traumatic spinal cord injury. Pain. 2006; 122(1-2): 197-209.
2. Nitche M A and Paulus W. Excitability changes induced
in the human motor cortex by weak transcranial direct current stimulation. J.
Physiol. 2000; 527(3), 633-39.
3. Datta A, Truong D and Minhas P et al. Inter-individual
variation during transcranial direct current stimulation and normalization of
dose using MRI-derived computational models. Front. Psych. 2012, 3:1-8.
4. Kwon O I, Jeong W C and Sajib S Z K et al. Anisotropic conductivity tensor imaging in
MREIT using directional diffusion rate of water molecules. Phys. Med. Biol. 2014;
59 (12): 2955-74.
5. Kim M N, Ha T Y, Woo E J et al. Improved conductivity
reconstruction from multi-echo MREIT utilizing weighted voxel-specific signal-to-noise
ratios. Phys. Med. Biol. 2012; 57
(11):3643-59.
6. Sajib S Z K, Chauhan M and Banan G et al. Compensation
of lead-wire magnetic field contributions in MREIT experiment using image
segmentation: a phantom study. In Proc. Int. Soc. Magn. Reson. Med. 2019; 5049.
7. Sajib S Z K, Kim H J, Kwon O I et al. Regional
absolute conductivity reconstruction using projected current density in MREIT.
Phys. Med. Biol. 2012; 57
(18):5841-59.
8. Ronneberger O, Fischer P and Brox T. U-net:
convolutional networks for biomedical image segmentation arXiv:1505.04597,
2015.
9. Hyun C M, Kim H P and Lee S M et al. Deep learning for undersampled MRI reconstruction. Phys. Med. Biol. 2018; 63(13): 15 pp.
10. Sadleir R J,
Grant S, Zhang S U et al. Noise analysis in MREIT at 3 and 11 Tesla field
strength. Physiol. Meas. 2005; 27(5):875-84.